RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 RAB28P51157 221 aa12.2□□□□□ -0.46
USP40-214ENST00000483519 MC2RQ01718 297 aa12.2□□□□□ -0.46
USP40-214ENST00000483519 FGL1Q08830 312 aa12.2□□□□□ -0.46
USP40-214ENST00000483519 OR7E24Q6IFN5 339 aa12.2□□□□□ -0.46
USP40-214ENST00000483519 ERN2Q76MJ5 926 aaKnown RBP12.2□□□□□ -0.46
USP40-214ENST00000483519 GLB1L2Q8IW92 636 aa12.2□□□□□ -0.46
USP40-214ENST00000483519 OR52E2Q8NGJ4 325 aa12.2□□□□□ -0.46
USP40-214ENST00000483519 COL26A1Q96A83 441 aa12.2□□□□□ -0.46
USP40-214ENST00000483519 ARRDC3Q96B67 414 aa12.2□□□□□ -0.46
USP40-214ENST00000483519 ZNF350Q9GZX5 532 aa12.2□□□□□ -0.46
USP40-214ENST00000483519 TM7SF3Q9NS93 570 aa12.2□□□□□ -0.46
USP40-214ENST00000483519 PURGQ9UJV8 347 aaKnown RBP12.2□□□□□ -0.46
USP40-214ENST00000483519 ICAM5Q9UMF0 924 aa12.2□□□□□ -0.46
USP40-214ENST00000483519 SLC6A5Q9Y345 797 aa12.2□□□□□ -0.46
USP40-214ENST00000483519 C5orf67F2Z3F1 127 aa12.2□□□□□ -0.46
USP40-214ENST00000483519 RBBP9O75884 186 aa12.2□□□□□ -0.46
USP40-214ENST00000483519 C8AP07357 584 aa12.2□□□□□ -0.46
USP40-214ENST00000483519 PTHLHP12272 177 aa12.2□□□□□ -0.46
USP40-214ENST00000483519 ADRB3P13945 408 aa12.2□□□□□ -0.46
USP40-214ENST00000483519 RPS4Y1P22090 263 aaKnown RBP12.2□□□□□ -0.46
USP40-214ENST00000483519 MAOBP27338 520 aa12.2□□□□□ -0.46
USP40-214ENST00000483519 PSMB10P40306 273 aa12.2□□□□□ -0.46
USP40-214ENST00000483519 GRM7Q14831 915 aa12.2□□□□□ -0.46
USP40-214ENST00000483519 OR10K1Q8NGX5 313 aa12.2□□□□□ -0.46
USP40-214ENST00000483519 OR14A16Q8NHC5 309 aa12.2□□□□□ -0.46
USP40-214ENST00000483519 TCEAL4Q96EI5 215 aa12.2□□□□□ -0.46
USP40-214ENST00000483519 RAB11FIP5Q9BXF6 653 aa12.2□□□□□ -0.46
USP40-214ENST00000483519 TMEM138Q9NPI0 162 aa12.2□□□□□ -0.46
USP40-214ENST00000483519 MEPEQ9NQ76 525 aaPredicted RBP12.2□□□□□ -0.46
USP40-214ENST00000483519 TAS2R3Q9NYW6 316 aa12.2□□□□□ -0.46
USP40-214ENST00000483519 NCDNQ9UBB6 729 aa12.2□□□□□ -0.46
USP40-214ENST00000483519 TRIOBPQ9H2D6 2365 aa12.19□□□□□ -0.46
USP40-214ENST00000483519 ZNF98A6NK75 572 aa12.19□□□□□ -0.46
USP40-214ENST00000483519 FAM74A7A6NL05 159 aa12.19□□□□□ -0.46
USP40-214ENST00000483519 CTNSO60931 367 aa12.19□□□□□ -0.46
USP40-214ENST00000483519 CSF1P09603 554 aa12.19□□□□□ -0.46
USP40-214ENST00000483519 MGMTP16455 207 aa12.19□□□□□ -0.46
USP40-214ENST00000483519 DDX6P26196 483 aaKnown RBP eCLIP12.19□□□□□ -0.46
USP40-214ENST00000483519 COL9A2Q14055 689 aaPredicted RBP12.19□□□□□ -0.46
USP40-214ENST00000483519 PON3Q15166 354 aa12.19□□□□□ -0.46
USP40-214ENST00000483519 PCGF3Q3KNV8 242 aa12.19□□□□□ -0.46
USP40-214ENST00000483519 FAM74A3Q4VXF1 159 aa12.19□□□□□ -0.46
USP40-214ENST00000483519 ZNF613Q6PF04 617 aa12.19□□□□□ -0.46
USP40-214ENST00000483519 LRRN1Q6UXK5 716 aa12.19□□□□□ -0.46
USP40-214ENST00000483519 ADAMTSL4Q6UY14 1074 aa12.19□□□□□ -0.46
USP40-214ENST00000483519 PAQR7Q86WK9 346 aa12.19□□□□□ -0.46
USP40-214ENST00000483519 LSRQ86X29 649 aaPredicted RBP12.19□□□□□ -0.46
USP40-214ENST00000483519 CAMKVQ8NCB2 501 aa12.19□□□□□ -0.46
USP40-214ENST00000483519 SDR9C7Q8NEX9 313 aa12.19□□□□□ -0.46
USP40-214ENST00000483519 XKR8Q9H6D3 395 aa12.19□□□□□ -0.46
USP40-214ENST00000483519 TMEM27Q9HBJ8 222 aa12.19□□□□□ -0.46
USP40-214ENST00000483519 TCF7L1Q9HCS4 588 aa12.19□□□□□ -0.46
USP40-214ENST00000483519 SERTAD3Q9UJW9 196 aa12.19□□□□□ -0.46
USP40-214ENST00000483519 MRTO4Q9UKD2 239 aaKnown RBP12.19□□□□□ -0.46
USP40-214ENST00000483519 FBXL21Q9UKT6 434 aa12.19□□□□□ -0.46
USP40-214ENST00000483519 H7C2Y5 167 aa12.19□□□□□ -0.46
USP40-214ENST00000483519 IGF2P01344 180 aa12.19□□□□□ -0.46
USP40-214ENST00000483519 HOXA1P49639 335 aaPredicted RBP12.19□□□□□ -0.46
USP40-214ENST00000483519 CSRP2Q16527 193 aa12.19□□□□□ -0.46
USP40-214ENST00000483519 C2orf68Q2NKX9 166 aa12.19□□□□□ -0.46
USP40-214ENST00000483519 DNM1P46Q6ZS02 220 aa12.19□□□□□ -0.46
USP40-214ENST00000483519 MTSS1LQ765P7 747 aa12.19□□□□□ -0.46
USP40-214ENST00000483519 CCDC36Q8IYA8 594 aa12.19□□□□□ -0.46
USP40-214ENST00000483519 OR2L13Q8N349 312 aa12.19□□□□□ -0.46
USP40-214ENST00000483519 OR6N1Q8NGY5 312 aa12.19□□□□□ -0.46
USP40-214ENST00000483519 TNFRSF13CQ96RJ3 184 aa12.19□□□□□ -0.46
USP40-214ENST00000483519 USP36Q9P275 1121 aaKnown RBP12.19□□□□□ -0.46
USP40-214ENST00000483519 NDRG3Q9UGV2 375 aa12.19□□□□□ -0.46
USP40-214ENST00000483519 MKI67P46013 3256 aaKnown RBP12.19□□□□□ -0.46
USP40-214ENST00000483519 GXYLT2A0PJZ3 443 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 RFPL4AA6NLU0 287 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 RFPL4AL1F8VTS6 287 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 RNGTTO60942 597 aaKnown RBP12.18□□□□□ -0.46
USP40-214ENST00000483519 GLSO94925 669 aaPredicted RBP12.18□□□□□ -0.46
USP40-214ENST00000483519 AGTR1P30556 359 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 CCR2P41597 374 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 NTHL1P78549 312 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 SORDQ00796 357 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 MELKQ14680 651 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 DCAF12L2Q5VW00 463 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 SLC35F3Q8IY50 421 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 MUC20Q8N307 709 aaPredicted RBP12.18□□□□□ -0.46
USP40-214ENST00000483519 RELL2Q8NC24 303 aaPredicted RBP12.18□□□□□ -0.46
USP40-214ENST00000483519 TMIEQ8NEW7 156 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 OR4C16Q8NGL9 310 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 OR2L8Q8NGY9 312 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 OR4K13Q8NH42 304 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 OR8D1Q8WZ84 308 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 ZNF559Q9BR84 538 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 LMAN2LQ9H0V9 348 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 ZNF576Q9H609 170 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 IFT22Q9H7X7 185 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 RASL12Q9NYN1 266 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 CYB5R1Q9UHQ9 305 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 KCNK7Q9Y2U2 307 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 TNRC18O15417 2968 aaPredicted RBP12.18□□□□□ -0.46
USP40-214ENST00000483519 H7C417 338 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 BTF3P20290 206 aaKnown RBP12.18□□□□□ -0.46
USP40-214ENST00000483519 STARP49675 285 aa12.18□□□□□ -0.46
USP40-214ENST00000483519 RPS15P62841 145 aaKnown RBP12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms