RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 OR52E2Q8NGJ4 325 aa13.15□□□□□ -0.3
CHD3-211ENST00000481999 MOSPD2Q8NHP6 518 aa13.15□□□□□ -0.3
CHD3-211ENST00000481999 ERMAPQ96PL5 475 aaPredicted RBP13.15□□□□□ -0.3
CHD3-211ENST00000481999 TTYH2Q9BSA4 534 aa13.15□□□□□ -0.3
CHD3-211ENST00000481999 RANGRFQ9HD47 186 aaPredicted RBP13.15□□□□□ -0.3
CHD3-211ENST00000481999 EFCAB7A8K855 629 aa13.15□□□□□ -0.3
CHD3-211ENST00000481999 FAM171A2A8MVW0 826 aa13.15□□□□□ -0.3
CHD3-211ENST00000481999 BLOC1S5-TXNDC5H3BN57 136 aa13.15□□□□□ -0.3
CHD3-211ENST00000481999 TRIM3O75382 744 aaPredicted RBP13.15□□□□□ -0.3
CHD3-211ENST00000481999 SOX30O94993 753 aa13.15□□□□□ -0.3
CHD3-211ENST00000481999 PSKH1P11801 424 aa13.15□□□□□ -0.3
CHD3-211ENST00000481999 AVPR2P30518 371 aa13.15□□□□□ -0.3
CHD3-211ENST00000481999 ACY1Q03154 408 aa13.15□□□□□ -0.3
CHD3-211ENST00000481999 GALEQ14376 348 aa13.15□□□□□ -0.3
CHD3-211ENST00000481999 SF3A2Q15428 464 aaKnown RBP13.15□□□□□ -0.3
CHD3-211ENST00000481999 C10orf53Q8N6V4 93 aa13.15□□□□□ -0.3
CHD3-211ENST00000481999 ZNF563Q8TA94 476 aa13.15□□□□□ -0.3
CHD3-211ENST00000481999 RASD2Q96D21 266 aa13.15□□□□□ -0.3
CHD3-211ENST00000481999 KTI12Q96EK9 354 aaPredicted RBP13.15□□□□□ -0.3
CHD3-211ENST00000481999 RNF170Q96K19 258 aa13.15□□□□□ -0.3
CHD3-211ENST00000481999 KCNJ15Q99712 375 aa13.15□□□□□ -0.3
CHD3-211ENST00000481999 TIMP4Q99727 224 aa13.15□□□□□ -0.3
CHD3-211ENST00000481999 GALNT9Q9HCQ5 603 aa13.15□□□□□ -0.3
CHD3-211ENST00000481999 ENAMQ9NRM1 1142 aa13.15□□□□□ -0.3
CHD3-211ENST00000481999 HRH3Q9Y5N1 445 aa13.15□□□□□ -0.3
CHD3-211ENST00000481999 IER3IP1Q9Y5U9 82 aa13.15□□□□□ -0.3
CHD3-211ENST00000481999 FAM240BA0A1B0GVZ2 78 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 PMS2P1A4D2B8 440 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 PRR33A8MZF0 331 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 FAM25AB3EWG3 89 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 FAM25CB3EWG5 89 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 FAM25GB3EWG6 89 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 PRR23D1E9PI22 279 aaPredicted RBP13.14□□□□□ -0.31
CHD3-211ENST00000481999 MT-ND5P03915 603 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 HEXBP07686 556 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 PRR23D2P0DMB1 279 aaPredicted RBP13.14□□□□□ -0.31
CHD3-211ENST00000481999 PNLIPP16233 465 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 TACR3P29371 465 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 FBXW4P57775 412 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 TATDN3Q17R31 274 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 HBMQ6B0K9 141 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 ANKRD37Q7Z713 158 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 PPP1R3BQ86XI6 285 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 SLITRK4Q8IW52 837 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 GPALPP1Q8IXQ4 340 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 OR10H4Q8NGA5 316 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 OR5W2Q8NH69 310 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 OR14A16Q8NHC5 309 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 KCTD12Q96CX2 325 aaKnown RBP13.14□□□□□ -0.31
CHD3-211ENST00000481999 GFM1Q96RP9 751 aaKnown RBP13.14□□□□□ -0.31
CHD3-211ENST00000481999 UBL7Q96S82 380 aaPredicted RBP13.14□□□□□ -0.31
CHD3-211ENST00000481999 IER2Q9BTL4 223 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 SIRT4Q9Y6E7 314 aaPredicted RBP13.14□□□□□ -0.31
CHD3-211ENST00000481999 ELOA3DA6NLF2 546 aaPredicted RBP13.14□□□□□ -0.31
CHD3-211ENST00000481999 RIIAD1A6NNX1 92 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 TSPAN2O60636 221 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 F13BP05160 661 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 RPL4P36578 427 aaKnown RBP13.14□□□□□ -0.31
CHD3-211ENST00000481999 ERVK-25P63136 954 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 RNF4P78317 190 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 LTBQ06643 244 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 TRAM1Q15629 374 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 ELOA3BQ3SY89 546 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 IDNKQ5T6J7 187 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 OTPQ5XKR4 325 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 ZNF385CQ66K41 422 aaPredicted RBP13.14□□□□□ -0.31
CHD3-211ENST00000481999 SLC29A4Q7RTT9 530 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 ZNF527Q8NB42 609 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 ELOA3Q8NG57 546 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 FYTTD1Q96QD9 318 aaKnown RBP13.14□□□□□ -0.31
CHD3-211ENST00000481999 NMNAT3Q96T66 252 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 SPSB2Q99619 263 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 EVA1AQ9H8M9 152 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 PAQR5Q9NXK6 330 aaPredicted RBP13.14□□□□□ -0.31
CHD3-211ENST00000481999 KLHL21Q9UJP4 597 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 SRPK3Q9UPE1 567 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 SLC35A3Q9Y2D2 325 aa13.14□□□□□ -0.31
CHD3-211ENST00000481999 NDUFB5O43674 189 aa13.13□□□□□ -0.31
CHD3-211ENST00000481999 CDC40O60508 579 aaKnown RBP eCLIP13.13□□□□□ -0.31
CHD3-211ENST00000481999 FAM157BP0CG42 384 aa13.13□□□□□ -0.31
CHD3-211ENST00000481999 ELK1P19419 428 aa13.13□□□□□ -0.31
CHD3-211ENST00000481999 COL5A1P20908 1838 aaPredicted RBP13.13□□□□□ -0.31
CHD3-211ENST00000481999 AQP2P41181 271 aa13.13□□□□□ -0.31
CHD3-211ENST00000481999 CAPZA2P47755 286 aa13.13□□□□□ -0.31
CHD3-211ENST00000481999 PSMD4P55036 377 aaKnown RBP13.13□□□□□ -0.31
CHD3-211ENST00000481999 TAS2R43P59537 309 aa13.13□□□□□ -0.31
CHD3-211ENST00000481999 DCDP81605 110 aaKnown RBP13.13□□□□□ -0.31
CHD3-211ENST00000481999 TRILQ7L0X0 811 aa13.13□□□□□ -0.31
CHD3-211ENST00000481999 SSX6Q7RTT6 188 aa13.13□□□□□ -0.31
CHD3-211ENST00000481999 ATG4DQ86TL0 474 aaPredicted RBP13.13□□□□□ -0.31
CHD3-211ENST00000481999 TCTE3Q8IZS6 198 aa13.13□□□□□ -0.31
CHD3-211ENST00000481999 DTWD2Q8NBA8 298 aa13.13□□□□□ -0.31
CHD3-211ENST00000481999 LILRB4Q8NHJ6 448 aa13.13□□□□□ -0.31
CHD3-211ENST00000481999 ZMYND19Q96E35 227 aaPredicted RBP13.13□□□□□ -0.31
CHD3-211ENST00000481999 SGTBQ96EQ0 304 aa13.13□□□□□ -0.31
CHD3-211ENST00000481999 TSSK2Q96PF2 358 aa13.13□□□□□ -0.31
CHD3-211ENST00000481999 TEAD3Q99594 435 aa13.13□□□□□ -0.31
CHD3-211ENST00000481999 WDR77Q9BQA1 342 aaPredicted RBP13.13□□□□□ -0.31
CHD3-211ENST00000481999 TMEM246Q9BRR3 403 aa13.13□□□□□ -0.31
CHD3-211ENST00000481999 EXTL2Q9UBQ6 330 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms