RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 ANKRD27Q96NW4 1050 aa12.32□□□□□ -0.44
UPF3A-204ENST00000475218 DHRS9Q9BPW9 319 aa12.32□□□□□ -0.44
UPF3A-204ENST00000475218 MGAT4BQ9UQ53 548 aa12.32□□□□□ -0.44
UPF3A-204ENST00000475218 AMDHD2Q9Y303 409 aa12.32□□□□□ -0.44
UPF3A-204ENST00000475218 A0A096LNT2 108 aa12.31□□□□□ -0.44
UPF3A-204ENST00000475218 A0A0B4J2E0 115 aa12.31□□□□□ -0.44
UPF3A-204ENST00000475218 A0A1B0GX12 115 aa12.31□□□□□ -0.44
UPF3A-204ENST00000475218 M0R082 166 aa12.31□□□□□ -0.44
UPF3A-204ENST00000475218 FBP2O00757 339 aa12.31□□□□□ -0.44
UPF3A-204ENST00000475218 TRAF3IP2O43734 574 aaPredicted RBP12.31□□□□□ -0.44
UPF3A-204ENST00000475218 LYPD3O95274 346 aa12.31□□□□□ -0.44
UPF3A-204ENST00000475218 HPRP00739 348 aa12.31□□□□□ -0.44
UPF3A-204ENST00000475218 GZMMP51124 257 aa12.31□□□□□ -0.44
UPF3A-204ENST00000475218 VEZF1Q14119 521 aa12.31□□□□□ -0.44
UPF3A-204ENST00000475218 NPTX1Q15818 432 aa12.31□□□□□ -0.44
UPF3A-204ENST00000475218 DUSP7Q16829 419 aa12.31□□□□□ -0.44
UPF3A-204ENST00000475218 TBRG1Q3YBR2 411 aa12.31□□□□□ -0.44
UPF3A-204ENST00000475218 ALG10BQ5I7T1 473 aa12.31□□□□□ -0.44
UPF3A-204ENST00000475218 NIPAL3Q6P499 406 aa12.31□□□□□ -0.44
UPF3A-204ENST00000475218 KLHL17Q6TDP4 642 aa12.31□□□□□ -0.44
UPF3A-204ENST00000475218 NET1Q7Z628 596 aaPredicted RBP12.31□□□□□ -0.44
UPF3A-204ENST00000475218 DHDDSQ86SQ9 333 aa12.31□□□□□ -0.44
UPF3A-204ENST00000475218 PRIMA1Q86XR5 153 aa12.31□□□□□ -0.44
UPF3A-204ENST00000475218 HIPK4Q8NE63 616 aa12.31□□□□□ -0.44
UPF3A-204ENST00000475218 OR4D11Q8NGI4 311 aa12.31□□□□□ -0.44
UPF3A-204ENST00000475218 ZNF417Q8TAU3 575 aa12.31□□□□□ -0.44
UPF3A-204ENST00000475218 HTRA1Q92743 480 aa12.31□□□□□ -0.44
UPF3A-204ENST00000475218 TRMT61AQ96FX7 289 aaKnown RBP12.31□□□□□ -0.44
UPF3A-204ENST00000475218 ZNF587Q96SQ5 575 aaPredicted RBP12.31□□□□□ -0.44
UPF3A-204ENST00000475218 CGREF1Q99674 301 aa12.31□□□□□ -0.44
UPF3A-204ENST00000475218 LINC00470Q9BZP3 86 aa12.31□□□□□ -0.44
UPF3A-204ENST00000475218 CACYBPQ9HB71 228 aaKnown RBP12.31□□□□□ -0.44
UPF3A-204ENST00000475218 LEF1Q9UJU2 399 aaPredicted RBP12.31□□□□□ -0.44
UPF3A-204ENST00000475218 ARFGEF3Q5TH69 2177 aa12.31□□□□□ -0.44
UPF3A-204ENST00000475218 A0A087WUJ7 227 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 IGHV1-18A0A0C4DH31 117 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 INAFM1C9JVW0 142 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 LRRN3E7EW58 273 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 ATP6V1G2-DDX39BF2Z307 99 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 MS4A18H0YCH9 400 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 THY1P04216 161 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 HLA-DOBP13765 273 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 CBLP22681 906 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 SLC6A2P23975 617 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 GRPRP30550 384 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 CLDN17P56750 224 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 TGFBR3Q03167 851 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 OR1Q1Q15612 314 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 ETFDHQ16134 617 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 MS4A18Q3C1V0 323 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 PHYHD1Q5SRE7 291 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 FAM69AQ5T7M9 428 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 CGB2Q6NT52 195 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 KRT73Q86Y46 540 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 TMEM123Q8N131 208 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 SMYD1Q8NB12 490 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 SLC41A3Q96GZ6 507 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 MOGAT1Q96PD6 335 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 ARHGDIGQ99819 225 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 CACNG6Q9BXT2 260 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 REG4Q9BYZ8 158 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 KAT8Q9H7Z6 458 aaKnown RBP12.3□□□□□ -0.44
UPF3A-204ENST00000475218 SEC61A2Q9H9S3 476 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 CBLN4Q9NTU7 201 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 TESQ9UGI8 421 aaKnown RBP12.3□□□□□ -0.44
UPF3A-204ENST00000475218 NDUFAF1Q9Y375 327 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 SONP18583 2426 aaKnown RBP12.3□□□□□ -0.44
UPF3A-204ENST00000475218 TRAV36DV7A0A075B6V5 113 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 LOC102725191A0A1B0GVB3 256 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 ZNF503-AS2A6NEH8 195 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 EVPLLA8MZ36 301 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 RPL36A-HNRNPH2H7BZ11 118 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 M0R3H8 397 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 BGLAPP02818 100 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 OPN1SWP03999 348 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 PCSK6P29122 969 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 CDH12P55289 794 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 RGS8P57771 180 aaPredicted RBP12.3□□□□□ -0.44
UPF3A-204ENST00000475218 PRPS1P60891 318 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 TUBA1BP68363 451 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 TUBA4AP68366 448 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 NRF1Q16656 503 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 MST1LQ2TV78 715 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 AGAP6Q5VW22 663 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 FAM91A1Q658Y4 838 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 ULK3Q6PHR2 472 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 LINC00114Q6XXX2 140 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 WDR88Q6ZMY6 472 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 TUBA1AQ71U36 451 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 MYPOPQ86VE0 399 aaPredicted RBP12.3□□□□□ -0.44
UPF3A-204ENST00000475218 RBM45Q8IUH3 476 aaKnown RBP12.3□□□□□ -0.44
UPF3A-204ENST00000475218 ARMC8Q8IUR7 673 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 DNAJA4Q8WW22 397 aaPredicted RBP12.3□□□□□ -0.44
UPF3A-204ENST00000475218 OXGR1Q96P68 337 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 SPATA5L1Q9BVQ7 753 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 RABEP2Q9H5N1 569 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 RPS6KB2Q9UBS0 482 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 CORO2BQ9UQ03 480 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 MOKQ9UQ07 419 aa12.3□□□□□ -0.44
UPF3A-204ENST00000475218 RCE1Q9Y256 329 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms