RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 MOV10Q9HCE1 1003 aaKnown RBP17.22■□□□□ 0.35
COL9A3-210ENST00000472880 CA10Q9NS85 328 aa17.22■□□□□ 0.35
COL9A3-210ENST00000472880 RCE1Q9Y256 329 aa17.22■□□□□ 0.35
COL9A3-210ENST00000472880 ATRQ13535 2644 aa17.21■□□□□ 0.35
COL9A3-210ENST00000472880 A0A096LPE4 126 aa17.21■□□□□ 0.35
COL9A3-210ENST00000472880 A0A1W2PPZ6 126 aa17.21■□□□□ 0.35
COL9A3-210ENST00000472880 FAM157CP0CG43 387 aa17.21■□□□□ 0.35
COL9A3-210ENST00000472880 BMP2P12643 396 aa17.21■□□□□ 0.35
COL9A3-210ENST00000472880 ZNF16P17020 682 aaPredicted RBP17.21■□□□□ 0.35
COL9A3-210ENST00000472880 ZNF43P17038 809 aa17.21■□□□□ 0.35
COL9A3-210ENST00000472880 PDLIM4P50479 330 aa17.21■□□□□ 0.35
COL9A3-210ENST00000472880 CLDN17P56750 224 aa17.21■□□□□ 0.35
COL9A3-210ENST00000472880 TUBA1BP68363 451 aa17.21■□□□□ 0.35
COL9A3-210ENST00000472880 TUBA4AP68366 448 aa17.21■□□□□ 0.35
COL9A3-210ENST00000472880 ROR2Q01974 943 aaKnown RBP17.21■□□□□ 0.35
COL9A3-210ENST00000472880 CYB5R2Q6BCY4 276 aa17.21■□□□□ 0.35
COL9A3-210ENST00000472880 ANKRD16Q6P6B7 361 aa17.21■□□□□ 0.35
COL9A3-210ENST00000472880 TUBA1AQ71U36 451 aa17.21■□□□□ 0.35
COL9A3-210ENST00000472880 SLC46A3Q7Z3Q1 461 aa17.21■□□□□ 0.35
COL9A3-210ENST00000472880 KDM8Q8N371 416 aa17.21■□□□□ 0.35
COL9A3-210ENST00000472880 MAGEE2Q8TD90 523 aaPredicted RBP17.21■□□□□ 0.35
COL9A3-210ENST00000472880 BCL2L2Q92843 193 aaPredicted RBP17.21■□□□□ 0.35
COL9A3-210ENST00000472880 SORCS2Q96PQ0 1159 aa17.21■□□□□ 0.35
COL9A3-210ENST00000472880 PIMREGQ9BSJ6 248 aa17.21■□□□□ 0.35
COL9A3-210ENST00000472880 USH1CQ9Y6N9 552 aa17.21■□□□□ 0.35
COL9A3-210ENST00000472880 NR5A2O00482 541 aa17.2■□□□□ 0.34
COL9A3-210ENST00000472880 ETS2P15036 469 aa17.2■□□□□ 0.34
COL9A3-210ENST00000472880 SERPINF1P36955 418 aa17.2■□□□□ 0.34
COL9A3-210ENST00000472880 EGR4Q05215 589 aa17.2■□□□□ 0.34
COL9A3-210ENST00000472880 MST1LQ2TV78 715 aa17.2■□□□□ 0.34
COL9A3-210ENST00000472880 C3orf36Q3SXR2 165 aa17.2■□□□□ 0.34
COL9A3-210ENST00000472880 C5orf46Q6UWT4 87 aa17.2■□□□□ 0.34
COL9A3-210ENST00000472880 C6orf89Q6UWU4 347 aa17.2■□□□□ 0.34
COL9A3-210ENST00000472880 KTI12Q96EK9 354 aaPredicted RBP17.2■□□□□ 0.34
COL9A3-210ENST00000472880 C12orf10Q9HB07 376 aa17.2■□□□□ 0.34
COL9A3-210ENST00000472880 TMEM160Q9NX00 188 aa17.2■□□□□ 0.34
COL9A3-210ENST00000472880 CRNNQ9UBG3 495 aaPredicted RBP17.2■□□□□ 0.34
COL9A3-210ENST00000472880 ALPK2Q86TB3 2170 aa17.2■□□□□ 0.34
COL9A3-210ENST00000472880 COL6A5A8TX70 2615 aa17.19■□□□□ 0.34
COL9A3-210ENST00000472880 NDUFS8O00217 210 aa17.19■□□□□ 0.34
COL9A3-210ENST00000472880 AIM2O14862 343 aa17.19■□□□□ 0.34
COL9A3-210ENST00000472880 POLR3GO15318 223 aaPredicted RBP17.19■□□□□ 0.34
COL9A3-210ENST00000472880 AKAP8O43823 692 aaKnown RBP17.19■□□□□ 0.34
COL9A3-210ENST00000472880 OR2T1O43869 369 aa17.19■□□□□ 0.34
COL9A3-210ENST00000472880 SLC43A1O75387 559 aa17.19■□□□□ 0.34
COL9A3-210ENST00000472880 PDE5AO76074 875 aa17.19■□□□□ 0.34
COL9A3-210ENST00000472880 CECR9P0C854 216 aa17.19■□□□□ 0.34
COL9A3-210ENST00000472880 IGHV4-31P0DP07 118 aa17.19■□□□□ 0.34
COL9A3-210ENST00000472880 PRKAR1BP31321 381 aa17.19■□□□□ 0.34
COL9A3-210ENST00000472880 NCALDP61601 193 aa17.19■□□□□ 0.34
COL9A3-210ENST00000472880 LSM11P83369 360 aaKnown RBP eCLIP17.19■□□□□ 0.342e-9■■□□□ 12.6
COL9A3-210ENST00000472880 IL1RL1Q01638 556 aa17.19■□□□□ 0.34
COL9A3-210ENST00000472880 NAAAQ02083 359 aa17.19■□□□□ 0.34
COL9A3-210ENST00000472880 C1DQ13901 141 aaKnown RBP17.19■□□□□ 0.34
COL9A3-210ENST00000472880 GGTLC2Q14390 218 aa17.19■□□□□ 0.34
COL9A3-210ENST00000472880 CARTPTQ16568 116 aa17.19■□□□□ 0.34
COL9A3-210ENST00000472880 GCNT6Q5T4J0 391 aa17.19■□□□□ 0.34
COL9A3-210ENST00000472880 FAM69AQ5T7M9 428 aa17.19■□□□□ 0.34
COL9A3-210ENST00000472880 VHLLQ6RSH7 139 aa17.19■□□□□ 0.34
COL9A3-210ENST00000472880 EPGNQ6UW88 154 aa17.19■□□□□ 0.34
COL9A3-210ENST00000472880 GPR137CQ8N3F9 429 aa17.19■□□□□ 0.34
COL9A3-210ENST00000472880 SLC38A4Q969I6 547 aa17.19■□□□□ 0.34
COL9A3-210ENST00000472880 OXGR1Q96P68 337 aa17.19■□□□□ 0.34
COL9A3-210ENST00000472880 VRK1Q99986 396 aaPredicted RBP17.19■□□□□ 0.34
COL9A3-210ENST00000472880 BEX2Q9BXY8 128 aa17.19■□□□□ 0.34
COL9A3-210ENST00000472880 NELFAQ9H3P2 528 aa17.19■□□□□ 0.34
COL9A3-210ENST00000472880 MYOZ1Q9NP98 299 aaPredicted RBP17.19■□□□□ 0.34
COL9A3-210ENST00000472880 LPAR3Q9UBY5 353 aa17.19■□□□□ 0.34
COL9A3-210ENST00000472880 SEC14L4Q9UDX3 406 aa17.19■□□□□ 0.34
COL9A3-210ENST00000472880 RTTNQ86VV8 2226 aa17.19■□□□□ 0.34
COL9A3-210ENST00000472880 FBN3Q75N90 2809 aa17.18■□□□□ 0.34
COL9A3-210ENST00000472880 B9A039 149 aa17.18■□□□□ 0.34
COL9A3-210ENST00000472880 M0R082 166 aa17.18■□□□□ 0.34
COL9A3-210ENST00000472880 ARAFP10398 606 aa17.18■□□□□ 0.34
COL9A3-210ENST00000472880 HOXB1P14653 301 aaPredicted RBP17.18■□□□□ 0.34
COL9A3-210ENST00000472880 HOXB9P17482 250 aaPredicted RBP17.18■□□□□ 0.34
COL9A3-210ENST00000472880 GZMKP49863 264 aa17.18■□□□□ 0.34
COL9A3-210ENST00000472880 ALG10BQ5I7T1 473 aa17.18■□□□□ 0.34
COL9A3-210ENST00000472880 KRT73Q86Y46 540 aa17.18■□□□□ 0.34
COL9A3-210ENST00000472880 FAM169BQ8N8A8 192 aa17.18■□□□□ 0.34
COL9A3-210ENST00000472880 ANKK1Q8NFD2 765 aa17.18■□□□□ 0.34
COL9A3-210ENST00000472880 OR4F15Q8NGB8 312 aa17.18■□□□□ 0.34
COL9A3-210ENST00000472880 NFKBIDQ8NI38 313 aa17.18■□□□□ 0.34
COL9A3-210ENST00000472880 ZNF417Q8TAU3 575 aa17.18■□□□□ 0.34
COL9A3-210ENST00000472880 TMEM158Q8WZ71 300 aa17.18■□□□□ 0.34
COL9A3-210ENST00000472880 ZNF587Q96SQ5 575 aaPredicted RBP17.18■□□□□ 0.34
COL9A3-210ENST00000472880 SPATA5L1Q9BVQ7 753 aa17.18■□□□□ 0.34
COL9A3-210ENST00000472880 SHARPINQ9H0F6 387 aa17.18■□□□□ 0.34
COL9A3-210ENST00000472880 TCF7L2Q9NQB0 619 aa17.18■□□□□ 0.34
COL9A3-210ENST00000472880 B3GAT1Q9P2W7 334 aa17.18■□□□□ 0.34
COL9A3-210ENST00000472880 A0A1B0GWA3 101 aa17.17■□□□□ 0.34
COL9A3-210ENST00000472880 HMGB1P1B2RPK0 211 aaPredicted RBP17.17■□□□□ 0.34
COL9A3-210ENST00000472880 RPL36A-HNRNPH2H7BZ11 118 aa17.17■□□□□ 0.34
COL9A3-210ENST00000472880 FZD7O75084 574 aa17.17■□□□□ 0.34
COL9A3-210ENST00000472880 ZNF432O94892 652 aa17.17■□□□□ 0.34
COL9A3-210ENST00000472880 IGLV1-44P01699 117 aa17.17■□□□□ 0.34
COL9A3-210ENST00000472880 OR4A8P0C604 315 aa17.17■□□□□ 0.34
COL9A3-210ENST00000472880 PPIBP23284 216 aaKnown RBP17.17■□□□□ 0.34
COL9A3-210ENST00000472880 GRPRP30550 384 aa17.17■□□□□ 0.34
COL9A3-210ENST00000472880 NR4A2P43354 598 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms