RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 CLDN17P56750 224 aa18.33■□□□□ 0.52
COL9A3-207ENST00000467819 ROR2Q01974 943 aaKnown RBP18.33■□□□□ 0.52
COL9A3-207ENST00000467819 NAAAQ02083 359 aa18.33■□□□□ 0.52
COL9A3-207ENST00000467819 MSANTD1Q6ZTZ1 278 aa18.33■□□□□ 0.52
COL9A3-207ENST00000467819 ARIH2OSQ8N7S6 290 aa18.33■□□□□ 0.52
COL9A3-207ENST00000467819 MFSD8Q8NHS3 518 aa18.33■□□□□ 0.52
COL9A3-207ENST00000467819 MAL2Q969L2 176 aa18.33■□□□□ 0.52
COL9A3-207ENST00000467819 PTDSS2Q9BVG9 487 aa18.33■□□□□ 0.52
COL9A3-207ENST00000467819 SHARPINQ9H0F6 387 aa18.33■□□□□ 0.52
COL9A3-207ENST00000467819 NELFAQ9H3P2 528 aa18.33■□□□□ 0.52
COL9A3-207ENST00000467819 SEC61A2Q9H9S3 476 aa18.33■□□□□ 0.52
COL9A3-207ENST00000467819 SDR39U1Q9NRG7 319 aaPredicted RBP18.33■□□□□ 0.52
COL9A3-207ENST00000467819 THUMPD1Q9NXG2 353 aaKnown RBP18.33■□□□□ 0.52
COL9A3-207ENST00000467819 LPAR3Q9UBY5 353 aa18.33■□□□□ 0.52
COL9A3-207ENST00000467819 SEC14L4Q9UDX3 406 aa18.33■□□□□ 0.52
COL9A3-207ENST00000467819 ARPC4-TTLL3A0A0A6YYG9 625 aa18.32■□□□□ 0.52
COL9A3-207ENST00000467819 VWC2LB2RUY7 222 aa18.32■□□□□ 0.52
COL9A3-207ENST00000467819 FTCDNL1E5RQL4 147 aa18.32■□□□□ 0.52
COL9A3-207ENST00000467819 LMX1BO60663 402 aa18.32■□□□□ 0.52
COL9A3-207ENST00000467819 GZMKP49863 264 aa18.32■□□□□ 0.52
COL9A3-207ENST00000467819 EGR4Q05215 589 aa18.32■□□□□ 0.52
COL9A3-207ENST00000467819 ANKRD16Q6P6B7 361 aa18.32■□□□□ 0.52
COL9A3-207ENST00000467819 KTI12Q96EK9 354 aaPredicted RBP18.32■□□□□ 0.52
COL9A3-207ENST00000467819 LINC00470Q9BZP3 86 aa18.32■□□□□ 0.52
COL9A3-207ENST00000467819 CHODLQ9H9P2 273 aa18.32■□□□□ 0.52
COL9A3-207ENST00000467819 RPS6KB2Q9UBS0 482 aa18.32■□□□□ 0.52
COL9A3-207ENST00000467819 PCDHB14Q9Y5E9 798 aa18.32■□□□□ 0.52
COL9A3-207ENST00000467819 OR4A8P0C604 315 aa18.31■□□□□ 0.52
COL9A3-207ENST00000467819 ZNF43P17038 809 aa18.31■□□□□ 0.52
COL9A3-207ENST00000467819 CALCRP30988 508 aa18.31■□□□□ 0.52
COL9A3-207ENST00000467819 NR4A2P43354 598 aa18.31■□□□□ 0.52
COL9A3-207ENST00000467819 RGNQ15493 299 aa18.31■□□□□ 0.52
COL9A3-207ENST00000467819 ADIPOQQ15848 244 aa18.31■□□□□ 0.52
COL9A3-207ENST00000467819 SLC2A7Q6PXP3 512 aa18.31■□□□□ 0.52
COL9A3-207ENST00000467819 IL17RELQ6ZVW7 336 aa18.31■□□□□ 0.52
COL9A3-207ENST00000467819 MIER2Q8N344 545 aa18.31■□□□□ 0.52
COL9A3-207ENST00000467819 MAGEE2Q8TD90 523 aaPredicted RBP18.31■□□□□ 0.52
COL9A3-207ENST00000467819 GTF2H4Q92759 462 aa18.31■□□□□ 0.52
COL9A3-207ENST00000467819 PAIP1Q9H074 479 aaKnown RBP18.31■□□□□ 0.52
COL9A3-207ENST00000467819 A4GALTQ9NPC4 353 aa18.31■□□□□ 0.52
COL9A3-207ENST00000467819 NKIRAS1Q9NYS0 192 aa18.31■□□□□ 0.52
COL9A3-207ENST00000467819 CRNNQ9UBG3 495 aaPredicted RBP18.31■□□□□ 0.52
COL9A3-207ENST00000467819 B9A039 149 aa18.3■□□□□ 0.52
COL9A3-207ENST00000467819 NDUFS8O00217 210 aa18.3■□□□□ 0.52
COL9A3-207ENST00000467819 CLIC1O00299 241 aa18.3■□□□□ 0.52
COL9A3-207ENST00000467819 SLC43A1O75387 559 aa18.3■□□□□ 0.52
COL9A3-207ENST00000467819 APEHP13798 732 aaKnown RBP18.3■□□□□ 0.52
COL9A3-207ENST00000467819 PAX7P23759 505 aa18.3■□□□□ 0.52
COL9A3-207ENST00000467819 IGFBP5P24593 272 aa18.3■□□□□ 0.52
COL9A3-207ENST00000467819 SH3BGRP55822 239 aaPredicted RBP18.3■□□□□ 0.52
COL9A3-207ENST00000467819 ARF1P84077 181 aaKnown RBP18.3■□□□□ 0.52
COL9A3-207ENST00000467819 IL1RL1Q01638 556 aa18.3■□□□□ 0.52
COL9A3-207ENST00000467819 MYPOPQ86VE0 399 aaPredicted RBP18.3■□□□□ 0.52
COL9A3-207ENST00000467819 BBS10Q8TAM1 723 aa18.3■□□□□ 0.52
COL9A3-207ENST00000467819 FOXN4Q96NZ1 517 aa18.3■□□□□ 0.52
COL9A3-207ENST00000467819 ZNF317Q96PQ6 595 aaPredicted RBP18.3■□□□□ 0.52
COL9A3-207ENST00000467819 PRR14Q9BWN1 585 aa18.3■□□□□ 0.52
COL9A3-207ENST00000467819 RAD21L1Q9H4I0 556 aa18.3■□□□□ 0.52
COL9A3-207ENST00000467819 BCL2L10Q9HD36 194 aa18.3■□□□□ 0.52
COL9A3-207ENST00000467819 KCNS2Q9ULS6 477 aa18.3■□□□□ 0.52
COL9A3-207ENST00000467819 RCE1Q9Y256 329 aa18.3■□□□□ 0.52
COL9A3-207ENST00000467819 IGHV4-61A0A0C4DH41 118 aa18.29■□□□□ 0.52
COL9A3-207ENST00000467819 LOC100289279A0A1B0GTE1 492 aa18.29■□□□□ 0.52
COL9A3-207ENST00000467819 SLC35F4A4IF30 521 aa18.29■□□□□ 0.52
COL9A3-207ENST00000467819 C5orf58C9J3I9 102 aa18.29■□□□□ 0.52
COL9A3-207ENST00000467819 M0R082 166 aa18.29■□□□□ 0.52
COL9A3-207ENST00000467819 PDE5AO76074 875 aa18.29■□□□□ 0.52
COL9A3-207ENST00000467819 IGLV1-44P01699 117 aa18.29■□□□□ 0.52
COL9A3-207ENST00000467819 CELA3BP08861 270 aa18.29■□□□□ 0.52
COL9A3-207ENST00000467819 MAGOHP61326 146 aaKnown RBP18.29■□□□□ 0.52
COL9A3-207ENST00000467819 C1DQ13901 141 aaKnown RBP18.29■□□□□ 0.52
COL9A3-207ENST00000467819 C3orf36Q3SXR2 165 aa18.29■□□□□ 0.52
COL9A3-207ENST00000467819 IQCCQ4KMZ1 466 aa18.29■□□□□ 0.52
COL9A3-207ENST00000467819 FAM166AQ6J272 317 aa18.29■□□□□ 0.52
COL9A3-207ENST00000467819 GPR137CQ8N3F9 429 aa18.29■□□□□ 0.52
COL9A3-207ENST00000467819 ZNF417Q8TAU3 575 aa18.29■□□□□ 0.52
COL9A3-207ENST00000467819 MSI2Q96DH6 328 aaKnown RBP18.29■□□□□ 0.52
COL9A3-207ENST00000467819 OXGR1Q96P68 337 aa18.29■□□□□ 0.52
COL9A3-207ENST00000467819 ZNF587Q96SQ5 575 aaPredicted RBP18.29■□□□□ 0.52
COL9A3-207ENST00000467819 B3GAT1Q9P2W7 334 aa18.29■□□□□ 0.52
COL9A3-207ENST00000467819 LOC390937A0A1W2PQ73 354 aa18.28■□□□□ 0.52
COL9A3-207ENST00000467819 AIM2O14862 343 aa18.28■□□□□ 0.52
COL9A3-207ENST00000467819 ZNF432O94892 652 aa18.28■□□□□ 0.52
COL9A3-207ENST00000467819 CBLP22681 906 aa18.28■□□□□ 0.52
COL9A3-207ENST00000467819 IDH3GP51553 393 aaPredicted RBP18.28■□□□□ 0.52
COL9A3-207ENST00000467819 FADDQ13158 208 aa18.28■□□□□ 0.52
COL9A3-207ENST00000467819 EFNB3Q15768 340 aa18.28■□□□□ 0.52
COL9A3-207ENST00000467819 OR4F15Q8NGB8 312 aa18.28■□□□□ 0.52
COL9A3-207ENST00000467819 NFKBIDQ8NI38 313 aa18.28■□□□□ 0.52
COL9A3-207ENST00000467819 TAAR8Q969N4 342 aa18.28■□□□□ 0.52
COL9A3-207ENST00000467819 SLC35B4Q969S0 331 aa18.28■□□□□ 0.52
COL9A3-207ENST00000467819 PLK3Q9H4B4 646 aa18.28■□□□□ 0.52
COL9A3-207ENST00000467819 GPR35Q9HC97 309 aa18.28■□□□□ 0.52
COL9A3-207ENST00000467819 MYOZ1Q9NP98 299 aaPredicted RBP18.28■□□□□ 0.52
COL9A3-207ENST00000467819 A0A1B0GWA3 101 aa18.27■□□□□ 0.52
COL9A3-207ENST00000467819 RPL36A-HNRNPH2H7BZ11 118 aa18.27■□□□□ 0.52
COL9A3-207ENST00000467819 hCG_2039718K7EN88 272 aa18.27■□□□□ 0.52
COL9A3-207ENST00000467819 SEC14L2O76054 403 aa18.27■□□□□ 0.52
COL9A3-207ENST00000467819 IGKV3-15P01624 115 aa18.27■□□□□ 0.52
COL9A3-207ENST00000467819 BMP2P12643 396 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms