RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 ARPC4-TTLL3A0A0A6YYG9 625 aa16.68■□□□□ 0.26
COL9A3-206ENST00000466532 A0A1W2PPZ6 126 aa16.68■□□□□ 0.26
COL9A3-206ENST00000466532 RNF212BA8MTL3 300 aa16.68■□□□□ 0.26
COL9A3-206ENST00000466532 CRYAAP02489 173 aa16.68■□□□□ 0.26
COL9A3-206ENST00000466532 BMP2P12643 396 aa16.68■□□□□ 0.26
COL9A3-206ENST00000466532 ZNF43P17038 809 aa16.68■□□□□ 0.26
COL9A3-206ENST00000466532 USF1P22415 310 aaPredicted RBP16.68■□□□□ 0.26
COL9A3-206ENST00000466532 CLDN17P56750 224 aa16.68■□□□□ 0.26
COL9A3-206ENST00000466532 ROR2Q01974 943 aaKnown RBP16.68■□□□□ 0.26
COL9A3-206ENST00000466532 ANKRD16Q6P6B7 361 aa16.68■□□□□ 0.26
COL9A3-206ENST00000466532 EPGNQ6UW88 154 aa16.68■□□□□ 0.26
COL9A3-206ENST00000466532 GOLGA6L1Q8N7Z2 621 aa16.68■□□□□ 0.26
COL9A3-206ENST00000466532 SORCS2Q96PQ0 1159 aa16.68■□□□□ 0.26
COL9A3-206ENST00000466532 REPIN1Q9BWE0 567 aaKnown RBP16.68■□□□□ 0.26
COL9A3-206ENST00000466532 TMBIM4Q9HC24 238 aa16.68■□□□□ 0.26
COL9A3-206ENST00000466532 CA10Q9NS85 328 aa16.68■□□□□ 0.26
COL9A3-206ENST00000466532 SEC14L4Q9UDX3 406 aa16.68■□□□□ 0.26
COL9A3-206ENST00000466532 CDC42EP3Q9UKI2 254 aa16.68■□□□□ 0.26
COL9A3-206ENST00000466532 FBN3Q75N90 2809 aa16.68■□□□□ 0.26
COL9A3-206ENST00000466532 ZNF16P17020 682 aaPredicted RBP16.67■□□□□ 0.26
COL9A3-206ENST00000466532 HOXB9P17482 250 aaPredicted RBP16.67■□□□□ 0.26
COL9A3-206ENST00000466532 SERPINF1P36955 418 aa16.67■□□□□ 0.26
COL9A3-206ENST00000466532 PDLIM4P50479 330 aa16.67■□□□□ 0.26
COL9A3-206ENST00000466532 SH3BGRP55822 239 aaPredicted RBP16.67■□□□□ 0.26
COL9A3-206ENST00000466532 STX1BP61266 288 aa16.67■□□□□ 0.26
COL9A3-206ENST00000466532 NAAAQ02083 359 aa16.67■□□□□ 0.26
COL9A3-206ENST00000466532 CYB5R2Q6BCY4 276 aa16.67■□□□□ 0.26
COL9A3-206ENST00000466532 C6orf89Q6UWU4 347 aa16.67■□□□□ 0.26
COL9A3-206ENST00000466532 MAGEE2Q8TD90 523 aaPredicted RBP16.67■□□□□ 0.26
COL9A3-206ENST00000466532 ZNF317Q96PQ6 595 aaPredicted RBP16.67■□□□□ 0.26
COL9A3-206ENST00000466532 VRK1Q99986 396 aaPredicted RBP16.67■□□□□ 0.26
COL9A3-206ENST00000466532 NELFAQ9H3P2 528 aa16.67■□□□□ 0.26
COL9A3-206ENST00000466532 CRNNQ9UBG3 495 aaPredicted RBP16.67■□□□□ 0.26
COL9A3-206ENST00000466532 RCE1Q9Y256 329 aa16.67■□□□□ 0.26
COL9A3-206ENST00000466532 ZNF432O94892 652 aa16.66■□□□□ 0.26
COL9A3-206ENST00000466532 CECR9P0C854 216 aa16.66■□□□□ 0.26
COL9A3-206ENST00000466532 FAM157CP0CG43 387 aa16.66■□□□□ 0.26
COL9A3-206ENST00000466532 IGHV4-31P0DP07 118 aa16.66■□□□□ 0.26
COL9A3-206ENST00000466532 ETS2P15036 469 aa16.66■□□□□ 0.26
COL9A3-206ENST00000466532 PRKAR1BP31321 381 aa16.66■□□□□ 0.26
COL9A3-206ENST00000466532 LSM11P83369 360 aaKnown RBP eCLIP16.66■□□□□ 0.266e-10■■□□□ 13.7
COL9A3-206ENST00000466532 ARF1P84077 181 aaKnown RBP16.66■□□□□ 0.26
COL9A3-206ENST00000466532 C3orf36Q3SXR2 165 aa16.66■□□□□ 0.26
COL9A3-206ENST00000466532 VHLLQ6RSH7 139 aa16.66■□□□□ 0.26
COL9A3-206ENST00000466532 SLC46A3Q7Z3Q1 461 aa16.66■□□□□ 0.26
COL9A3-206ENST00000466532 NFKBIDQ8NI38 313 aa16.66■□□□□ 0.26
COL9A3-206ENST00000466532 SLC38A4Q969I6 547 aa16.66■□□□□ 0.26
COL9A3-206ENST00000466532 TAAR8Q969N4 342 aa16.66■□□□□ 0.26
COL9A3-206ENST00000466532 OXGR1Q96P68 337 aa16.66■□□□□ 0.26
COL9A3-206ENST00000466532 SEC61A2Q9H9S3 476 aa16.66■□□□□ 0.26
COL9A3-206ENST00000466532 C12orf10Q9HB07 376 aa16.66■□□□□ 0.26
COL9A3-206ENST00000466532 MOV10Q9HCE1 1003 aaKnown RBP16.66■□□□□ 0.26
COL9A3-206ENST00000466532 TCF7L2Q9NQB0 619 aa16.66■□□□□ 0.26
COL9A3-206ENST00000466532 TMEM160Q9NX00 188 aa16.66■□□□□ 0.26
COL9A3-206ENST00000466532 SLC25A37Q9NYZ2 338 aa16.66■□□□□ 0.26
COL9A3-206ENST00000466532 B3GAT1Q9P2W7 334 aa16.66■□□□□ 0.26
COL9A3-206ENST00000466532 A0A1B0GWA3 101 aa16.65■□□□□ 0.26
COL9A3-206ENST00000466532 VWC2LB2RUY7 222 aa16.65■□□□□ 0.26
COL9A3-206ENST00000466532 B9A039 149 aa16.65■□□□□ 0.26
COL9A3-206ENST00000466532 M0R082 166 aa16.65■□□□□ 0.26
COL9A3-206ENST00000466532 AIM2O14862 343 aa16.65■□□□□ 0.26
COL9A3-206ENST00000466532 POLR3GO15318 223 aaPredicted RBP16.65■□□□□ 0.26
COL9A3-206ENST00000466532 OR2T1O43869 369 aa16.65■□□□□ 0.26
COL9A3-206ENST00000466532 SLC43A1O75387 559 aa16.65■□□□□ 0.26
COL9A3-206ENST00000466532 ARAFP10398 606 aa16.65■□□□□ 0.26
COL9A3-206ENST00000466532 HOXB1P14653 301 aaPredicted RBP16.65■□□□□ 0.26
COL9A3-206ENST00000466532 HTR2AP28223 471 aa16.65■□□□□ 0.26
COL9A3-206ENST00000466532 MRPL19P49406 292 aaKnown RBP16.65■□□□□ 0.26
COL9A3-206ENST00000466532 C1DQ13901 141 aaKnown RBP16.65■□□□□ 0.26
COL9A3-206ENST00000466532 GGTLC2Q14390 218 aa16.65■□□□□ 0.26
COL9A3-206ENST00000466532 LRIF1Q5T3J3 769 aa16.65■□□□□ 0.26
COL9A3-206ENST00000466532 GCNT6Q5T4J0 391 aa16.65■□□□□ 0.26
COL9A3-206ENST00000466532 FAM69AQ5T7M9 428 aa16.65■□□□□ 0.26
COL9A3-206ENST00000466532 C5orf46Q6UWT4 87 aa16.65■□□□□ 0.26
COL9A3-206ENST00000466532 MSRB3Q8IXL7 192 aa16.65■□□□□ 0.26
COL9A3-206ENST00000466532 LSMEM1Q8N8F7 131 aa16.65■□□□□ 0.26
COL9A3-206ENST00000466532 ANKS4BQ8N8V4 417 aa16.65■□□□□ 0.26
COL9A3-206ENST00000466532 ZNF417Q8TAU3 575 aa16.65■□□□□ 0.26
COL9A3-206ENST00000466532 ZNF587Q96SQ5 575 aaPredicted RBP16.65■□□□□ 0.26
COL9A3-206ENST00000466532 PIMREGQ9BSJ6 248 aa16.65■□□□□ 0.26
COL9A3-206ENST00000466532 RSPO3Q9BXY4 272 aaPredicted RBP16.65■□□□□ 0.26
COL9A3-206ENST00000466532 BEX2Q9BXY8 128 aa16.65■□□□□ 0.26
COL9A3-206ENST00000466532 RPL36A-HNRNPH2H7BZ11 118 aa16.64■□□□□ 0.25
COL9A3-206ENST00000466532 NDUFS8O00217 210 aa16.64■□□□□ 0.25
COL9A3-206ENST00000466532 FZD7O75084 574 aa16.64■□□□□ 0.25
COL9A3-206ENST00000466532 PDE5AO76074 875 aa16.64■□□□□ 0.25
COL9A3-206ENST00000466532 IGKV3-15P01624 115 aa16.64■□□□□ 0.25
COL9A3-206ENST00000466532 IGLV1-44P01699 117 aa16.64■□□□□ 0.25
COL9A3-206ENST00000466532 OR4A8P0C604 315 aa16.64■□□□□ 0.25
COL9A3-206ENST00000466532 CBLP22681 906 aa16.64■□□□□ 0.25
COL9A3-206ENST00000466532 GRPRP30550 384 aa16.64■□□□□ 0.25
COL9A3-206ENST00000466532 CALCRP30988 508 aa16.64■□□□□ 0.25
COL9A3-206ENST00000466532 IL1RL1Q01638 556 aa16.64■□□□□ 0.25
COL9A3-206ENST00000466532 ADIPOQQ15848 244 aa16.64■□□□□ 0.25
COL9A3-206ENST00000466532 CARTPTQ16568 116 aa16.64■□□□□ 0.25
COL9A3-206ENST00000466532 ALG10BQ5I7T1 473 aa16.64■□□□□ 0.25
COL9A3-206ENST00000466532 REEP3Q6NUK4 255 aa16.64■□□□□ 0.25
COL9A3-206ENST00000466532 KRT73Q86Y46 540 aa16.64■□□□□ 0.25
COL9A3-206ENST00000466532 FUNDC1Q8IVP5 155 aa16.64■□□□□ 0.25
COL9A3-206ENST00000466532 PHC2Q8IXK0 858 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms