RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 SULT2B1O00204 365 aa10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 CHP2O43745 196 aa10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 PDE5AO76074 875 aa10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 AQP8O94778 261 aa10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 PMS2P2O95744 297 aa10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 CRYGSP22914 178 aa10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 THBS2P35442 1172 aa10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 DIO1P49895 249 aa10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 CDH12P55289 794 aa10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 CSNK2A1P68400 391 aaPredicted RBP10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 SIRPAP78324 504 aa10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 FAM27E3Q08E93 113 aa10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 GUSBP1Q15486 140 aa10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 IFI44LQ53G44 452 aa10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 GTF2IRD2BQ6EKJ0 949 aa10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 PPP4R4Q6NUP7 873 aa10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 ZNF474Q6S9Z5 364 aaPredicted RBP10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 DEF8Q6ZN54 512 aa10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 FKBP9P1Q75LS8 142 aa10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 GTF2IRD2Q86UP8 949 aa10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 TSPYL5Q86VY4 417 aaPredicted RBP10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 LSRQ86X29 649 aaPredicted RBP10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 STK35Q8TDR2 534 aa10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 GEMIN6Q8WXD5 167 aaKnown RBP10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 GMPPAQ96IJ6 420 aaPredicted RBP10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 HSH2DQ96JZ2 352 aa10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 NSMCE2Q96MF7 247 aa10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 BTBD10Q9BSF8 475 aa10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 THTPAQ9BU02 230 aa10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 POTEKPQ9BYX7 375 aa10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 PLA2G12AQ9BZM1 189 aa10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 POLR2J2Q9GZM3 115 aaKnown RBP10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 POLR2J3Q9H1A7 115 aaKnown RBP10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 CXorf56Q9H5V9 222 aa10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 PLSCR4Q9NRQ2 329 aa10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 GLRX2Q9NS18 164 aa10.56□□□□□ -0.72
SQSTM1-206ENST00000466342 MEGF8Q7Z7M0 2845 aa10.55□□□□□ -0.72
SQSTM1-206ENST00000466342 A0A087WUJ7 227 aa10.55□□□□□ -0.72
SQSTM1-206ENST00000466342 DNPH1O43598 174 aa10.55□□□□□ -0.72
SQSTM1-206ENST00000466342 NPIPB7O75200 414 aa10.55□□□□□ -0.72
SQSTM1-206ENST00000466342 ATP5HO75947 161 aa10.55□□□□□ -0.72
SQSTM1-206ENST00000466342 THY1P04216 161 aa10.55□□□□□ -0.72
SQSTM1-206ENST00000466342 IFNW1P05000 195 aa10.55□□□□□ -0.72
SQSTM1-206ENST00000466342 IDUAP35475 653 aa10.55□□□□□ -0.72
SQSTM1-206ENST00000466342 RASSF2P50749 326 aa10.55□□□□□ -0.72
SQSTM1-206ENST00000466342 TAS2R41P59536 307 aa10.55□□□□□ -0.72
SQSTM1-206ENST00000466342 EGR4Q05215 589 aa10.55□□□□□ -0.72
SQSTM1-206ENST00000466342 TRIM25Q14258 630 aaKnown RBP10.55□□□□□ -0.72
SQSTM1-206ENST00000466342 C1orf140Q5VVS0 124 aa10.55□□□□□ -0.72
SQSTM1-206ENST00000466342 C5orf46Q6UWT4 87 aa10.55□□□□□ -0.72
SQSTM1-206ENST00000466342 ZNF610Q8N9Z0 462 aa10.55□□□□□ -0.72
SQSTM1-206ENST00000466342 RNF217Q8TC41 542 aa10.55□□□□□ -0.72
SQSTM1-206ENST00000466342 RNF128Q8TEB7 428 aa10.55□□□□□ -0.72
SQSTM1-206ENST00000466342 ROBO4Q8WZ75 1007 aa10.55□□□□□ -0.72
SQSTM1-206ENST00000466342 ZHX1-C8orf76Q96EF9 292 aa10.55□□□□□ -0.72
SQSTM1-206ENST00000466342 DNAJA3Q96EY1 480 aa10.55□□□□□ -0.72
SQSTM1-206ENST00000466342 CLPTM1LQ96KA5 538 aa10.55□□□□□ -0.72
SQSTM1-206ENST00000466342 OPN3Q9H1Y3 402 aaPredicted RBP10.55□□□□□ -0.72
SQSTM1-206ENST00000466342 ACTR3BQ9P1U1 418 aa10.55□□□□□ -0.72
SQSTM1-206ENST00000466342 SLC7A7Q9UM01 511 aa10.55□□□□□ -0.72
SQSTM1-206ENST00000466342 PROCRQ9UNN8 238 aa10.55□□□□□ -0.72
SQSTM1-206ENST00000466342 TRAPPC4Q9Y296 219 aa10.55□□□□□ -0.72
SQSTM1-206ENST00000466342 EMC9Q9Y3B6 208 aa10.55□□□□□ -0.72
SQSTM1-206ENST00000466342 IGKV1D-42A0A075B6H8 117 aa10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 C16orf97H3BN30 126 aa10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 SMAD9O15198 467 aaKnown RBP10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 DNAJC8O75937 253 aaPredicted RBP10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 PRKD3O94806 890 aa10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 OR5F1O95221 314 aa10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 LYPD3O95274 346 aa10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 AHSA1O95433 338 aa10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 PLGP00747 810 aaPredicted RBP10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 TGP01266 2768 aa10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 GPIP06744 558 aa10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 IMPDH2P12268 514 aa10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 POU2F1P14859 743 aa10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 ATP6V1B2P21281 511 aa10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 ENPP1P22413 925 aa10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 UGT2B10P36537 528 aa10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 CTBP2P56545 445 aa10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 OR2B6P58173 313 aa10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 SLC35A1P78382 337 aa10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 MTX3Q5HYI7 312 aa10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 LCN8Q6JVE9 175 aa10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 LINC00114Q6XXX2 140 aa10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 FCRLAQ7L513 359 aa10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 SLC43A2Q8N370 569 aa10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 FAM86B1Q8N7N1 296 aa10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 OR6K3Q8NGY3 331 aa10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 CCDC124Q96CT7 223 aaKnown RBP10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 ASB9Q96DX5 294 aa10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 KTI12Q96EK9 354 aaPredicted RBP10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 SLC41A3Q96GZ6 507 aa10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 MPP4Q96JB8 637 aa10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 PRRC1Q96M27 445 aa10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 HS3ST6Q96QI5 342 aa10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 TMEM43Q9BTV4 400 aa10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 PTDSS2Q9BVG9 487 aa10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 BEX2Q9BXY8 128 aa10.54□□□□□ -0.72
SQSTM1-206ENST00000466342 A4GNTQ9UNA3 340 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms