RNA–Protein interactions for RNA: ENST00000449744.1

CHD3-205, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 880 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-205ENST00000449744 OBP2BQ9NPH6 170 aa13.39□□□□□ -0.27
CHD3-205ENST00000449744 ATP23Q9Y6H3 246 aa13.39□□□□□ -0.27
CHD3-205ENST00000449744 NIPBLQ6KC79 2804 aaeCLIP13.39□□□□□ -0.27
CHD3-205ENST00000449744 CADP27708 2225 aa13.38□□□□□ -0.27
CHD3-205ENST00000449744 TRAV36DV7A0A075B6V5 113 aa13.38□□□□□ -0.27
CHD3-205ENST00000449744 E7EQL1 145 aa13.38□□□□□ -0.27
CHD3-205ENST00000449744 M0R082 166 aa13.38□□□□□ -0.27
CHD3-205ENST00000449744 SASH3O75995 380 aa13.38□□□□□ -0.27
CHD3-205ENST00000449744 MFN2O95140 757 aa13.38□□□□□ -0.27
CHD3-205ENST00000449744 LGI1O95970 557 aa13.38□□□□□ -0.27
CHD3-205ENST00000449744 PTNP21246 168 aa13.38□□□□□ -0.27
CHD3-205ENST00000449744 CBLP22681 906 aa13.38□□□□□ -0.27
CHD3-205ENST00000449744 TTKP33981 857 aa13.38□□□□□ -0.27
CHD3-205ENST00000449744 FABP6P51161 128 aa13.38□□□□□ -0.27
CHD3-205ENST00000449744 CLDN17P56750 224 aa13.38□□□□□ -0.27
CHD3-205ENST00000449744 UBE2NP61088 152 aaKnown RBP13.38□□□□□ -0.27
CHD3-205ENST00000449744 TNK1Q13470 666 aa13.38□□□□□ -0.27
CHD3-205ENST00000449744 MFSD13AQ14CX5 517 aa13.38□□□□□ -0.27
CHD3-205ENST00000449744 OR1Q1Q15612 314 aa13.38□□□□□ -0.27
CHD3-205ENST00000449744 HIKESHIQ53FT3 197 aa13.38□□□□□ -0.27
CHD3-205ENST00000449744 HMBOX1Q6NT76 420 aa13.38□□□□□ -0.27
CHD3-205ENST00000449744 H1FNTQ75WM6 255 aaPredicted RBP13.38□□□□□ -0.27
CHD3-205ENST00000449744 RETREG3Q86VR2 466 aa13.38□□□□□ -0.27
CHD3-205ENST00000449744 SMYD1Q8NB12 490 aa13.38□□□□□ -0.27
CHD3-205ENST00000449744 OR1K1Q8NGR3 316 aa13.38□□□□□ -0.27
CHD3-205ENST00000449744 ZNF417Q8TAU3 575 aa13.38□□□□□ -0.27
CHD3-205ENST00000449744 TAAR8Q969N4 342 aa13.38□□□□□ -0.27
CHD3-205ENST00000449744 ZNF587Q96SQ5 575 aaPredicted RBP13.38□□□□□ -0.27
CHD3-205ENST00000449744 LINC00470Q9BZP3 86 aa13.38□□□□□ -0.27
CHD3-205ENST00000449744 BARX1Q9HBU1 254 aaPredicted RBP13.38□□□□□ -0.27
CHD3-205ENST00000449744 CBLN4Q9NTU7 201 aa13.38□□□□□ -0.27
CHD3-205ENST00000449744 SEC14L4Q9UDX3 406 aa13.38□□□□□ -0.27
CHD3-205ENST00000449744 RCE1Q9Y256 329 aa13.38□□□□□ -0.27
CHD3-205ENST00000449744 B3GALT5Q9Y2C3 310 aa13.38□□□□□ -0.27
CHD3-205ENST00000449744 IGKV1D-42A0A075B6H8 117 aa13.37□□□□□ -0.27
CHD3-205ENST00000449744 A0A087WUJ7 227 aa13.37□□□□□ -0.27
CHD3-205ENST00000449744 M0QX08 132 aa13.37□□□□□ -0.27
CHD3-205ENST00000449744 AKAP8O43823 692 aaKnown RBP13.37□□□□□ -0.27
CHD3-205ENST00000449744 SLC43A1O75387 559 aa13.37□□□□□ -0.27
CHD3-205ENST00000449744 UPK3AO75631 287 aa13.37□□□□□ -0.27
CHD3-205ENST00000449744 CD8AP01732 235 aa13.37□□□□□ -0.27
CHD3-205ENST00000449744 OPN1SWP03999 348 aa13.37□□□□□ -0.27
CHD3-205ENST00000449744 TROVE2P10155 538 aaKnown RBP eCLIP13.37□□□□□ -0.27
CHD3-205ENST00000449744 NQO1P15559 274 aaKnown RBP13.37□□□□□ -0.27
CHD3-205ENST00000449744 PAX7P23759 505 aa13.37□□□□□ -0.27
CHD3-205ENST00000449744 GRPRP30550 384 aa13.37□□□□□ -0.27
CHD3-205ENST00000449744 SLC25A3Q00325 362 aa13.37□□□□□ -0.27
CHD3-205ENST00000449744 LGALS3BPQ08380 585 aa13.37□□□□□ -0.27
CHD3-205ENST00000449744 DMTNQ08495 405 aa13.37□□□□□ -0.27
CHD3-205ENST00000449744 SELPLGQ14242 412 aa13.37□□□□□ -0.27
CHD3-205ENST00000449744 NRF1Q16656 503 aa13.37□□□□□ -0.27
CHD3-205ENST00000449744 TBRG1Q3YBR2 411 aa13.37□□□□□ -0.27
CHD3-205ENST00000449744 PTOV1Q86YD1 416 aa13.37□□□□□ -0.27
CHD3-205ENST00000449744 SLC30A8Q8IWU4 369 aa13.37□□□□□ -0.27
CHD3-205ENST00000449744 MUC15Q8N387 334 aa13.37□□□□□ -0.27
CHD3-205ENST00000449744 C10orf53Q8N6V4 93 aa13.37□□□□□ -0.27
CHD3-205ENST00000449744 SLC26A7Q8TE54 656 aa13.37□□□□□ -0.27
CHD3-205ENST00000449744 ADAD1Q96M93 576 aaKnown RBP13.37□□□□□ -0.27
CHD3-205ENST00000449744 TMEM120AQ9BXJ8 343 aa13.37□□□□□ -0.27
CHD3-205ENST00000449744 ASPNQ9BXN1 380 aa13.37□□□□□ -0.27
CHD3-205ENST00000449744 ZNF469Q96JG9 3925 aaPredicted RBP13.37□□□□□ -0.27
CHD3-205ENST00000449744 A0A0B4J2E0 115 aa13.36□□□□□ -0.27
CHD3-205ENST00000449744 A0A1B0GX12 115 aa13.36□□□□□ -0.27
CHD3-205ENST00000449744 IGHV4-39P01824 125 aa13.36□□□□□ -0.27
CHD3-205ENST00000449744 ACVR1BP36896 505 aa13.36□□□□□ -0.27
CHD3-205ENST00000449744 SH3BGRP55822 239 aaPredicted RBP13.36□□□□□ -0.27
CHD3-205ENST00000449744 PCBP3P57721 371 aaKnown RBP13.36□□□□□ -0.27
CHD3-205ENST00000449744 ROR2Q01974 943 aaKnown RBP13.36□□□□□ -0.27
CHD3-205ENST00000449744 CYLC2Q14093 348 aaPredicted RBP13.36□□□□□ -0.27
CHD3-205ENST00000449744 INTS11Q5TA45 600 aaKnown RBP13.36□□□□□ -0.27
CHD3-205ENST00000449744 ZNF544Q6NX49 715 aa13.36□□□□□ -0.27
CHD3-205ENST00000449744 B3GLCTQ6Y288 498 aa13.36□□□□□ -0.27
CHD3-205ENST00000449744 PATL1Q86TB9 770 aaKnown RBP13.36□□□□□ -0.27
CHD3-205ENST00000449744 UEVLDQ8IX04 471 aa13.36□□□□□ -0.27
CHD3-205ENST00000449744 GPR137CQ8N3F9 429 aa13.36□□□□□ -0.27
CHD3-205ENST00000449744 OR6S1Q8NH40 331 aa13.36□□□□□ -0.27
CHD3-205ENST00000449744 OR10A6Q8NH74 314 aa13.36□□□□□ -0.27
CHD3-205ENST00000449744 BOD1Q96IK1 185 aa13.36□□□□□ -0.27
CHD3-205ENST00000449744 MCHR1Q99705 422 aa13.36□□□□□ -0.27
CHD3-205ENST00000449744 KCNS3Q9BQ31 491 aa13.36□□□□□ -0.27
CHD3-205ENST00000449744 CACNG6Q9BXT2 260 aa13.36□□□□□ -0.27
CHD3-205ENST00000449744 KAT8Q9H7Z6 458 aaKnown RBP13.36□□□□□ -0.27
CHD3-205ENST00000449744 MRGBPQ9NV56 204 aa13.36□□□□□ -0.27
CHD3-205ENST00000449744 KLHL14Q9P2G3 628 aa13.36□□□□□ -0.27
CHD3-205ENST00000449744 B3GAT1Q9P2W7 334 aa13.36□□□□□ -0.27
CHD3-205ENST00000449744 GDF2Q9UK05 429 aaPredicted RBP13.36□□□□□ -0.27
CHD3-205ENST00000449744 CORINQ9Y5Q5 1042 aa13.36□□□□□ -0.27
CHD3-205ENST00000449744 RNF223E7ERA6 249 aa13.35□□□□□ -0.27
CHD3-205ENST00000449744 M0R3H8 397 aa13.35□□□□□ -0.27
CHD3-205ENST00000449744 FZD7O75084 574 aa13.35□□□□□ -0.27
CHD3-205ENST00000449744 NDUFS7O75251 213 aa13.35□□□□□ -0.27
CHD3-205ENST00000449744 C8BP07358 591 aa13.35□□□□□ -0.27
CHD3-205ENST00000449744 BMP4P12644 408 aa13.35□□□□□ -0.27
CHD3-205ENST00000449744 ARFIP2P53365 341 aa13.35□□□□□ -0.27
CHD3-205ENST00000449744 NUDT6P53370 316 aa13.35□□□□□ -0.27
CHD3-205ENST00000449744 CDH12P55289 794 aa13.35□□□□□ -0.27
CHD3-205ENST00000449744 PPP2R2BQ00005 443 aa13.35□□□□□ -0.27
CHD3-205ENST00000449744 DUSP7Q16829 419 aa13.35□□□□□ -0.27
CHD3-205ENST00000449744 MMEL1Q495T6 779 aa13.35□□□□□ -0.27
CHD3-205ENST00000449744 SWT1Q5T5J6 900 aaKnown RBP13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms