RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 POLDIP3Q9BY77 421 aaKnown RBP16.49■□□□□ 0.23
SHH-204ENST00000441114 DCAF13Q9NV06 445 aaKnown RBP16.49■□□□□ 0.23
SHH-204ENST00000441114 ZNF226Q9NYT6 803 aa16.49■□□□□ 0.23
SHH-204ENST00000441114 MAGEL2Q9UJ55 1249 aa16.49■□□□□ 0.23
SHH-204ENST00000441114 B3GALT5Q9Y2C3 310 aa16.49■□□□□ 0.23
SHH-204ENST00000441114 UNC79Q9P2D8 2635 aa16.49■□□□□ 0.23
SHH-204ENST00000441114 CENPEQ02224 2701 aa16.48■□□□□ 0.23
SHH-204ENST00000441114 MS4A18H0YCH9 400 aa16.48■□□□□ 0.23
SHH-204ENST00000441114 ARPC2O15144 300 aa16.48■□□□□ 0.23
SHH-204ENST00000441114 CTAG2O75638 210 aa16.48■□□□□ 0.23
SHH-204ENST00000441114 SERPINI2O75830 405 aa16.48■□□□□ 0.23
SHH-204ENST00000441114 UBOX5O94941 541 aa16.48■□□□□ 0.23
SHH-204ENST00000441114 FUT4P22083 530 aa16.48■□□□□ 0.23
SHH-204ENST00000441114 AHCYP23526 432 aa16.48■□□□□ 0.23
SHH-204ENST00000441114 UGT2B15P54855 530 aa16.48■□□□□ 0.23
SHH-204ENST00000441114 FOXG1P55316 489 aaPredicted RBP16.48■□□□□ 0.23
SHH-204ENST00000441114 ST3GAL3Q11203 375 aa16.48■□□□□ 0.23
SHH-204ENST00000441114 P2RY6Q15077 328 aa16.48■□□□□ 0.23
SHH-204ENST00000441114 MS4A18Q3C1V0 323 aa16.48■□□□□ 0.23
SHH-204ENST00000441114 TSPO2Q5TGU0 170 aa16.48■□□□□ 0.23
SHH-204ENST00000441114 WFDC8Q8IUA0 241 aa16.48■□□□□ 0.23
SHH-204ENST00000441114 LRRC17Q8N6Y2 441 aa16.48■□□□□ 0.23
SHH-204ENST00000441114 FAM86B1Q8N7N1 296 aa16.48■□□□□ 0.23
SHH-204ENST00000441114 PFN4Q8NHR9 129 aa16.48■□□□□ 0.23
SHH-204ENST00000441114 TMEM239Q8WW34 195 aa16.48■□□□□ 0.23
SHH-204ENST00000441114 LURAP1Q96LR2 239 aa16.48■□□□□ 0.23
SHH-204ENST00000441114 NSMCE2Q96MF7 247 aa16.48■□□□□ 0.23
SHH-204ENST00000441114 GORASP2Q9H8Y8 452 aa16.48■□□□□ 0.23
SHH-204ENST00000441114 MEPEQ9NQ76 525 aaPredicted RBP16.48■□□□□ 0.23
SHH-204ENST00000441114 SLC7A10Q9NS82 523 aa16.48■□□□□ 0.23
SHH-204ENST00000441114 SAMD4AQ9UPU9 718 aaKnown RBP16.48■□□□□ 0.23
SHH-204ENST00000441114 CORINQ9Y5Q5 1042 aa16.48■□□□□ 0.23
SHH-204ENST00000441114 CIB4A0PJX0 185 aa16.47■□□□□ 0.23
SHH-204ENST00000441114 ENO4A6NNW6 628 aa16.47■□□□□ 0.23
SHH-204ENST00000441114 C11orf98E9PRG8 122 aa16.47■□□□□ 0.23
SHH-204ENST00000441114 PIP5K1CO60331 668 aa16.47■□□□□ 0.23
SHH-204ENST00000441114 FZD7O75084 574 aa16.47■□□□□ 0.23
SHH-204ENST00000441114 KRT33AO76009 404 aa16.47■□□□□ 0.23
SHH-204ENST00000441114 OR6A2O95222 327 aa16.47■□□□□ 0.23
SHH-204ENST00000441114 HPRP00739 348 aa16.47■□□□□ 0.23
SHH-204ENST00000441114 MT-ATP6P00846 226 aa16.47■□□□□ 0.23
SHH-204ENST00000441114 HIST1H2ABP04908 130 aa16.47■□□□□ 0.23
SHH-204ENST00000441114 THBDP07204 575 aa16.47■□□□□ 0.23
SHH-204ENST00000441114 ADORA3P0DMS8 318 aa16.47■□□□□ 0.23
SHH-204ENST00000441114 THRBP10828 461 aa16.47■□□□□ 0.23
SHH-204ENST00000441114 PPP3CBP16298 524 aa16.47■□□□□ 0.23
SHH-204ENST00000441114 DNAJA1P31689 397 aaKnown RBP16.47■□□□□ 0.23
SHH-204ENST00000441114 SELENOPP49908 381 aa16.47■□□□□ 0.23
SHH-204ENST00000441114 STK11Q15831 433 aa16.47■□□□□ 0.23
SHH-204ENST00000441114 ZNF74Q16587 644 aa16.47■□□□□ 0.23
SHH-204ENST00000441114 HIST3H2AQ7L7L0 130 aa16.47■□□□□ 0.23
SHH-204ENST00000441114 UEVLDQ8IX04 471 aa16.47■□□□□ 0.23
SHH-204ENST00000441114 SCAIQ8N9R8 606 aa16.47■□□□□ 0.23
SHH-204ENST00000441114 OR5J2Q8NH18 312 aa16.47■□□□□ 0.23
SHH-204ENST00000441114 HIST1H2ACQ93077 130 aa16.47■□□□□ 0.23
SHH-204ENST00000441114 PIK3IP1Q96FE7 263 aa16.47■□□□□ 0.23
SHH-204ENST00000441114 ZNF426Q9BUY5 554 aa16.47■□□□□ 0.23
SHH-204ENST00000441114 SLC19A3Q9BZV2 496 aa16.47■□□□□ 0.23
SHH-204ENST00000441114 CLEC4MQ9H2X3 399 aaPredicted RBP16.47■□□□□ 0.23
SHH-204ENST00000441114 NANSQ9NR45 359 aa16.47■□□□□ 0.23
SHH-204ENST00000441114 RASSF1Q9NS23 344 aa16.47■□□□□ 0.23
SHH-204ENST00000441114 ASB6Q9NWX5 421 aa16.47■□□□□ 0.23
SHH-204ENST00000441114 MRPL39Q9NYK5 338 aaKnown RBP16.47■□□□□ 0.23
SHH-204ENST00000441114 B3GAT1Q9P2W7 334 aa16.47■□□□□ 0.23
SHH-204ENST00000441114 MED31Q9Y3C7 131 aa16.47■□□□□ 0.23
SHH-204ENST00000441114 hCG_2039718K7EN88 272 aa16.46■□□□□ 0.23
SHH-204ENST00000441114 PLPP3O14495 311 aa16.46■□□□□ 0.23
SHH-204ENST00000441114 FFAR1O14842 300 aa16.46■□□□□ 0.23
SHH-204ENST00000441114 RAD51DO75771 328 aa16.46■□□□□ 0.23
SHH-204ENST00000441114 PDE5AO76074 875 aa16.46■□□□□ 0.23
SHH-204ENST00000441114 CNOT4O95628 575 aaKnown RBP16.46■□□□□ 0.23
SHH-204ENST00000441114 MT-ND1P03886 318 aa16.46■□□□□ 0.23
SHH-204ENST00000441114 HLA-DOBP13765 273 aa16.46■□□□□ 0.23
SHH-204ENST00000441114 RBM34P42696 430 aaKnown RBP16.46■□□□□ 0.23
SHH-204ENST00000441114 LGALS3BPQ08380 585 aa16.46■□□□□ 0.23
SHH-204ENST00000441114 CYP4Z1Q86W10 505 aa16.46■□□□□ 0.23
SHH-204ENST00000441114 ZNF433Q8N7K0 673 aaPredicted RBP16.46■□□□□ 0.23
SHH-204ENST00000441114 ADPRHL1Q8NDY3 354 aa16.46■□□□□ 0.23
SHH-204ENST00000441114 SGTBQ96EQ0 304 aa16.46■□□□□ 0.23
SHH-204ENST00000441114 HS6ST2Q96MM7 605 aa16.46■□□□□ 0.23
SHH-204ENST00000441114 SLCO5A1Q9H2Y9 848 aa16.46■□□□□ 0.23
SHH-204ENST00000441114 FKRPQ9H9S5 495 aa16.46■□□□□ 0.23
SHH-204ENST00000441114 C20orf141Q9NUB4 165 aa16.46■□□□□ 0.23
SHH-204ENST00000441114 ENPP4Q9Y6X5 453 aa16.46■□□□□ 0.23
SHH-204ENST00000441114 DIRAS1O95057 198 aa16.45■□□□□ 0.22
SHH-204ENST00000441114 CDH2P19022 906 aaPredicted RBP16.45■□□□□ 0.22
SHH-204ENST00000441114 FUT1P19526 365 aa16.45■□□□□ 0.22
SHH-204ENST00000441114 CRYGSP22914 178 aa16.45■□□□□ 0.22
SHH-204ENST00000441114 POU3F1Q03052 451 aaPredicted RBP16.45■□□□□ 0.22
SHH-204ENST00000441114 PUDPQ08623 228 aa16.45■□□□□ 0.22
SHH-204ENST00000441114 TRAM2Q15035 370 aa16.45■□□□□ 0.22
SHH-204ENST00000441114 FXNQ16595 210 aa16.45■□□□□ 0.22
SHH-204ENST00000441114 SPATS1Q496A3 300 aa16.45■□□□□ 0.22
SHH-204ENST00000441114 CYP2R1Q6VVX0 501 aa16.45■□□□□ 0.22
SHH-204ENST00000441114 SLC46A3Q7Z3Q1 461 aa16.45■□□□□ 0.22
SHH-204ENST00000441114 OFCC1Q8IZS5 231 aa16.45■□□□□ 0.22
SHH-204ENST00000441114 NRGNQ92686 78 aa16.45■□□□□ 0.22
SHH-204ENST00000441114 PYURFQ96I23 114 aa16.45■□□□□ 0.22
SHH-204ENST00000441114 EMC6Q9BV81 110 aa16.45■□□□□ 0.22
SHH-204ENST00000441114 OR10A4Q9H209 315 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms