RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 OR52P1PQ8NH57 321 aa6.79□□□□□ -1.32
VPS50-204ENST00000438395 PROX1Q92786 737 aa6.79□□□□□ -1.32
VPS50-204ENST00000438395 TMEM45BQ96B21 275 aa6.79□□□□□ -1.32
VPS50-204ENST00000438395 C3orf49Q96BT1 292 aa6.79□□□□□ -1.32
VPS50-204ENST00000438395 ZG16BQ96DA0 208 aa6.79□□□□□ -1.32
VPS50-204ENST00000438395 AURKBQ96GD4 344 aaPredicted RBP6.79□□□□□ -1.32
VPS50-204ENST00000438395 ALKBH3Q96Q83 286 aaPredicted RBP6.79□□□□□ -1.32
VPS50-204ENST00000438395 VRK1Q99986 396 aaPredicted RBP6.79□□□□□ -1.32
VPS50-204ENST00000438395 TMPRSS13Q9BYE2 586 aa6.79□□□□□ -1.32
VPS50-204ENST00000438395 RMND5AQ9H871 391 aa6.79□□□□□ -1.32
VPS50-204ENST00000438395 CHODLQ9H9P2 273 aa6.79□□□□□ -1.32
VPS50-204ENST00000438395 MEAF6Q9HAF1 191 aa6.79□□□□□ -1.32
VPS50-204ENST00000438395 SSU72Q9NP77 194 aaKnown RBP6.79□□□□□ -1.32
VPS50-204ENST00000438395 MYOZ1Q9NP98 299 aaPredicted RBP6.79□□□□□ -1.32
VPS50-204ENST00000438395 AIG1Q9NVV5 245 aa6.79□□□□□ -1.32
VPS50-204ENST00000438395 THUMPD1Q9NXG2 353 aaKnown RBP6.79□□□□□ -1.32
VPS50-204ENST00000438395 RPS6KB2Q9UBS0 482 aa6.79□□□□□ -1.32
VPS50-204ENST00000438395 FBXO9Q9UK97 447 aaPredicted RBP6.79□□□□□ -1.32
VPS50-204ENST00000438395 PRDM4Q9UKN5 801 aa6.79□□□□□ -1.32
VPS50-204ENST00000438395 FREM1Q5H8C1 2179 aa6.79□□□□□ -1.32
VPS50-204ENST00000438395 ALPK2Q86TB3 2170 aa6.79□□□□□ -1.32
VPS50-204ENST00000438395 HEATR5AQ86XA9 2040 aa6.79□□□□□ -1.32
VPS50-204ENST00000438395 CHD3Q12873 2000 aaKnown RBP6.78□□□□□ -1.32
VPS50-204ENST00000438395 ZC3H12DA2A288 527 aaKnown RBP6.78□□□□□ -1.32
VPS50-204ENST00000438395 A8MVM7 634 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 C5orf58C9J3I9 102 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 SLCO1B7G3V0H7 640 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 HDAC3O15379 428 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 AKAP8O43823 692 aaKnown RBP6.78□□□□□ -1.32
VPS50-204ENST00000438395 LMX1BO60663 402 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 LGI1O95970 557 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 IL6P05231 212 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 BCHEP06276 602 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 GKN3PP0CG01 181 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 IMPDH2P12268 514 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 APEHP13798 732 aaKnown RBP6.78□□□□□ -1.32
VPS50-204ENST00000438395 SERPINF1P36955 418 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 FOXG1P55316 489 aaPredicted RBP6.78□□□□□ -1.32
VPS50-204ENST00000438395 DSTNP60981 165 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 NCALDP61601 193 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 UFM1P61960 85 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 H3F3AP84243 136 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 TBRG1Q3YBR2 411 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 CEP85LQ5SZL2 805 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 C1orf140Q5VVS0 124 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 ATG16L1Q676U5 607 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 WDR93Q6P2C0 686 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 NIPAL3Q6P499 406 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 VHLLQ6RSH7 139 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 TMEM99Q8N816 258 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 WDR31Q8NA23 367 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 C10orf105Q8TEF2 133 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 SLC25A36Q96CQ1 311 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 ITCHQ96J02 903 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 ZNF317Q96PQ6 595 aaPredicted RBP6.78□□□□□ -1.32
VPS50-204ENST00000438395 SLC38A2Q96QD8 506 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 SORT1Q99523 831 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 KATNB1Q9BVA0 655 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 PIF1Q9H611 641 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 LIN7BQ9HAP6 207 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 DYNLRB1Q9NP97 96 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 RLIMQ9NVW2 624 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 TMEM160Q9NX00 188 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 SELENONQ9NZV5 590 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 EGFL7Q9UHF1 273 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 RASD1Q9Y272 281 aa6.78□□□□□ -1.32
VPS50-204ENST00000438395 ZNF443Q9Y2A4 671 aaPredicted RBP6.78□□□□□ -1.32
VPS50-204ENST00000438395 NUP214P35658 2090 aaPredicted RBP6.77□□□□□ -1.33
VPS50-204ENST00000438395 KRTAP9-6A0A140TA67 174 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 LOC390937A0A1W2PQ73 354 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 MEGF11A6BM72 1044 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 CDHR4A6H8M9 788 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 B9A039 149 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 PDLIM1O00151 329 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 SDHDO14521 159 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 FRS3O43559 492 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 SLC22A3O75751 556 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 PDE5AO76074 875 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 LY6HO94772 140 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 KITP10721 976 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 ZNF43P17038 809 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 RPS4Y1P22090 263 aaKnown RBP6.77□□□□□ -1.33
VPS50-204ENST00000438395 EPHA3P29320 983 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 NTF4P34130 210 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 CDKN2CP42773 168 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 CAPZA2P47755 286 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 STX1BP61266 288 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 SLC25A3Q00325 362 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 BST1Q10588 318 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 RNF220Q5VTB9 566 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 AP1ARQ63HQ0 302 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 ANKRD16Q6P6B7 361 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 ZNF836Q6ZNA1 936 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 VRK2Q86Y07 508 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 KRT73Q86Y46 540 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 PHC2Q8IXK0 858 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 GPR137CQ8N3F9 429 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 MREGQ8N565 214 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 OR4F15Q8NGB8 312 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 OR1K1Q8NGR3 316 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms