RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 NRIP3Q9NQ35 241 aa20.64■□□□□ 0.89
CPSF4-204ENST00000436336 TVP23BQ9NYZ1 205 aa20.64■□□□□ 0.89
CPSF4-204ENST00000436336 UBAP1Q9NZ09 502 aa20.64■□□□□ 0.89
CPSF4-204ENST00000436336 EIF1BO60739 113 aaKnown RBP20.63■□□□□ 0.89
CPSF4-204ENST00000436336 PPP1R3DO95685 299 aa20.63■□□□□ 0.89
CPSF4-204ENST00000436336 CRYABP02511 175 aaKnown RBP20.63■□□□□ 0.89
CPSF4-204ENST00000436336 CLDN18P56856 261 aa20.63■□□□□ 0.89
CPSF4-204ENST00000436336 RAC3P60763 192 aa20.63■□□□□ 0.89
CPSF4-204ENST00000436336 MYBPC1Q00872 1141 aa20.63■□□□□ 0.89
CPSF4-204ENST00000436336 HBMQ6B0K9 141 aa20.63■□□□□ 0.89
CPSF4-204ENST00000436336 PAQR6Q6TCH4 344 aa20.63■□□□□ 0.89
CPSF4-204ENST00000436336 IGFN1Q86VF2 1251 aa20.63■□□□□ 0.89
CPSF4-204ENST00000436336 SIAH3Q8IW03 269 aa20.63■□□□□ 0.89
CPSF4-204ENST00000436336 ENTHD1Q8IYW4 607 aa20.63■□□□□ 0.89
CPSF4-204ENST00000436336 TRUB1Q8WWH5 349 aaKnown RBP20.63■□□□□ 0.89
CPSF4-204ENST00000436336 FANCFQ9NPI8 374 aa20.63■□□□□ 0.89
CPSF4-204ENST00000436336 H0YC42 278 aa20.62■□□□□ 0.89
CPSF4-204ENST00000436336 RNF13O43567 381 aa20.62■□□□□ 0.89
CPSF4-204ENST00000436336 MPZL2O60487 215 aa20.62■□□□□ 0.89
CPSF4-204ENST00000436336 CD14P08571 375 aa20.62■□□□□ 0.89
CPSF4-204ENST00000436336 AHCYP23526 432 aa20.62■□□□□ 0.89
CPSF4-204ENST00000436336 PUDPQ08623 228 aa20.62■□□□□ 0.89
CPSF4-204ENST00000436336 MEIOBQ8N635 442 aa20.62■□□□□ 0.89
CPSF4-204ENST00000436336 TMEM99Q8N816 258 aa20.62■□□□□ 0.89
CPSF4-204ENST00000436336 ZHX1-C8orf76Q96EF9 292 aa20.62■□□□□ 0.89
CPSF4-204ENST00000436336 KATNB1Q9BVA0 655 aa20.62■□□□□ 0.89
CPSF4-204ENST00000436336 POLDIP3Q9BY77 421 aaKnown RBP20.62■□□□□ 0.89
CPSF4-204ENST00000436336 TSPAN10Q9H1Z9 355 aaPredicted RBP20.62■□□□□ 0.89
CPSF4-204ENST00000436336 RNF6Q9Y252 685 aa20.62■□□□□ 0.89
CPSF4-204ENST00000436336 A0A1B0GVC2 190 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 C11orf98E9PRG8 122 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 MS4A18H0YCH9 400 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 ARPC3O15145 178 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 F13BP05160 661 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 APEHP13798 732 aaKnown RBP20.61■□□□□ 0.89
CPSF4-204ENST00000436336 CLDN15P56746 228 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 CARD18P57730 90 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 CTXN1P60606 82 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 H3F3AP84243 136 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 FOXK2Q01167 660 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 CD47Q08722 323 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 MAD2L1BPQ15013 274 aaPredicted RBP20.61■□□□□ 0.89
CPSF4-204ENST00000436336 SNAPC1Q16533 368 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 MS4A18Q3C1V0 323 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 OR10D3Q8NH80 312 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 FBLIM1Q8WUP2 373 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 ERMAPQ96PL5 475 aaPredicted RBP20.61■□□□□ 0.89
CPSF4-204ENST00000436336 NAA11Q9BSU3 229 aaPredicted RBP20.61■□□□□ 0.89
CPSF4-204ENST00000436336 TIGARQ9NQ88 270 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 INIPQ9NRY2 104 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 PLSCR2Q9NRY7 297 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 ZNF226Q9NYT6 803 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 A0A1W2PNV4 684 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 AQP7P3A6NL99 342 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 SURF4O15260 269 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 IDH3BO43837 385 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 EIF1AXP47813 144 aaKnown RBP20.61■□□□□ 0.89
CPSF4-204ENST00000436336 PCYT1AP49585 367 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 P2RY4P51582 365 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 AGFG1P52594 562 aaKnown RBP20.61■□□□□ 0.89
CPSF4-204ENST00000436336 ARHGAP11AQ6P4F7 1023 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 PTCHD4Q6ZW05 846 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 OR8J1Q8NGP2 316 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 UBE2FQ969M7 185 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 PNPLA3Q9NST1 481 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 LUZP4Q9P127 313 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 SPRR3Q9UBC9 169 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 PCDHGB5Q9Y5G0 923 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 IER3IP1Q9Y5U9 82 aa20.61■□□□□ 0.89
CPSF4-204ENST00000436336 NPIPA5E9PKD4 350 aa20.6■□□□□ 0.89
CPSF4-204ENST00000436336 NOS3P29474 1203 aa20.6■□□□□ 0.89
CPSF4-204ENST00000436336 RPS3AP61247 264 aaKnown RBP20.6■□□□□ 0.89
CPSF4-204ENST00000436336 ERVK-25P63136 954 aa20.6■□□□□ 0.89
CPSF4-204ENST00000436336 EFNB1P98172 346 aa20.6■□□□□ 0.89
CPSF4-204ENST00000436336 RHOXF1Q8NHV9 184 aa20.6■□□□□ 0.89
CPSF4-204ENST00000436336 PLEKHA8Q96JA3 519 aa20.6■□□□□ 0.89
CPSF4-204ENST00000436336 TIMP4Q99727 224 aa20.6■□□□□ 0.89
CPSF4-204ENST00000436336 SRXN1Q9BYN0 137 aa20.6■□□□□ 0.89
CPSF4-204ENST00000436336 RASSF1Q9NS23 344 aa20.6■□□□□ 0.89
CPSF4-204ENST00000436336 PAQR5Q9NXK6 330 aaPredicted RBP20.6■□□□□ 0.89
CPSF4-204ENST00000436336 NPIPA1Q9UND3 350 aa20.6■□□□□ 0.89
CPSF4-204ENST00000436336 ADAM18Q9Y3Q7 739 aa20.6■□□□□ 0.89
CPSF4-204ENST00000436336 M0R129 80 aa20.59■□□□□ 0.89
CPSF4-204ENST00000436336 AQP7O14520 342 aa20.59■□□□□ 0.89
CPSF4-204ENST00000436336 IMPA2O14732 288 aa20.59■□□□□ 0.89
CPSF4-204ENST00000436336 CXCL13O43927 109 aa20.59■□□□□ 0.89
CPSF4-204ENST00000436336 CPN1P15169 458 aa20.59■□□□□ 0.89
CPSF4-204ENST00000436336 GABRB1P18505 474 aa20.59■□□□□ 0.89
CPSF4-204ENST00000436336 SNRPGP62308 76 aaKnown RBP20.59■□□□□ 0.89
CPSF4-204ENST00000436336 TMEM225Q6GV28 225 aa20.59■□□□□ 0.89
CPSF4-204ENST00000436336 FAM180AQ6UWF9 173 aa20.59■□□□□ 0.89
CPSF4-204ENST00000436336 FAM122BQ7Z309 247 aa20.59■□□□□ 0.89
CPSF4-204ENST00000436336 PXKQ7Z7A4 578 aa20.59■□□□□ 0.89
CPSF4-204ENST00000436336 TCEANCQ8N8B7 351 aa20.59■□□□□ 0.89
CPSF4-204ENST00000436336 Q8NA96 180 aa20.59■□□□□ 0.89
CPSF4-204ENST00000436336 ANKK1Q8NFD2 765 aa20.59■□□□□ 0.89
CPSF4-204ENST00000436336 CPNE4Q96A23 557 aaPredicted RBP20.59■□□□□ 0.89
CPSF4-204ENST00000436336 CMC2Q9NRP2 79 aa20.59■□□□□ 0.89
CPSF4-204ENST00000436336 PRKYO43930 277 aa20.58■□□□□ 0.89
CPSF4-204ENST00000436336 ENPP1P22413 925 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms