RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 H0YJX3 145 aa16.17■□□□□ 0.18
SDC1-203ENST00000403076 TP53P04637 393 aaPredicted RBP16.17■□□□□ 0.18
SDC1-203ENST00000403076 SLC6A6P31641 620 aa16.17■□□□□ 0.18
SDC1-203ENST00000403076 UQCRC1P31930 480 aa16.17■□□□□ 0.18
SDC1-203ENST00000403076 POLR2IP36954 125 aaKnown RBP16.17■□□□□ 0.18
SDC1-203ENST00000403076 AGFG1P52594 562 aaKnown RBP16.17■□□□□ 0.18
SDC1-203ENST00000403076 RPS4XP62701 263 aaKnown RBP16.17■□□□□ 0.18
SDC1-203ENST00000403076 PUDPQ08623 228 aa16.17■□□□□ 0.18
SDC1-203ENST00000403076 CLEC12AQ5QGZ9 265 aa16.17■□□□□ 0.18
SDC1-203ENST00000403076 CCDC103Q8IW40 242 aa16.17■□□□□ 0.18
SDC1-203ENST00000403076 KDM8Q8N371 416 aa16.17■□□□□ 0.18
SDC1-203ENST00000403076 DHRSXQ8N5I4 330 aa16.17■□□□□ 0.18
SDC1-203ENST00000403076 ZNF555Q8NEP9 628 aa16.17■□□□□ 0.18
SDC1-203ENST00000403076 CYGBQ8WWM9 190 aa16.17■□□□□ 0.18
SDC1-203ENST00000403076 ZNF570Q96NI8 536 aa16.17■□□□□ 0.18
SDC1-203ENST00000403076 TUBA1CQ9BQE3 449 aa16.17■□□□□ 0.18
SDC1-203ENST00000403076 IFT27Q9BW83 186 aa16.17■□□□□ 0.18
SDC1-203ENST00000403076 PLA2G12AQ9BZM1 189 aa16.17■□□□□ 0.18
SDC1-203ENST00000403076 TAS2R5Q9NYW4 299 aa16.17■□□□□ 0.18
SDC1-203ENST00000403076 F13BP05160 661 aa16.16■□□□□ 0.18
SDC1-203ENST00000403076 KLK2P20151 261 aa16.16■□□□□ 0.18
SDC1-203ENST00000403076 RBPJQ06330 500 aa16.16■□□□□ 0.18
SDC1-203ENST00000403076 FHL1Q13642 323 aa16.16■□□□□ 0.18
SDC1-203ENST00000403076 C1DQ13901 141 aaKnown RBP16.16■□□□□ 0.18
SDC1-203ENST00000403076 PON3Q15166 354 aa16.16■□□□□ 0.18
SDC1-203ENST00000403076 SF3B4Q15427 424 aaKnown RBP eCLIP16.16■□□□□ 0.18
SDC1-203ENST00000403076 ZNF239Q16600 458 aaKnown RBP16.16■□□□□ 0.18
SDC1-203ENST00000403076 ZNF585AQ6P3V2 769 aa16.16■□□□□ 0.18
SDC1-203ENST00000403076 THSD4Q6ZMP0 1018 aa16.16■□□□□ 0.18
SDC1-203ENST00000403076 FCRLAQ7L513 359 aa16.16■□□□□ 0.18
SDC1-203ENST00000403076 GPAT4Q86UL3 456 aa16.16■□□□□ 0.18
SDC1-203ENST00000403076 IGFN1Q86VF2 1251 aa16.16■□□□□ 0.18
SDC1-203ENST00000403076 ADPRHL1Q8NDY3 354 aa16.16■□□□□ 0.18
SDC1-203ENST00000403076 GABARAPL3Q9BY60 117 aa16.16■□□□□ 0.18
SDC1-203ENST00000403076 ENKD1Q9H0I2 346 aa16.16■□□□□ 0.18
SDC1-203ENST00000403076 INIPQ9NRY2 104 aa16.16■□□□□ 0.18
SDC1-203ENST00000403076 PNPLA3Q9NST1 481 aa16.16■□□□□ 0.18
SDC1-203ENST00000403076 KLHL13Q9P2N7 655 aa16.16■□□□□ 0.18
SDC1-203ENST00000403076 RASD1Q9Y272 281 aa16.16■□□□□ 0.18
SDC1-203ENST00000403076 ATMQ13315 3056 aa16.15■□□□□ 0.18
SDC1-203ENST00000403076 CLCA1A8K7I4 914 aa16.15■□□□□ 0.18
SDC1-203ENST00000403076 ZNF814B7Z6K7 855 aa16.15■□□□□ 0.18
SDC1-203ENST00000403076 MS4A18H0YCH9 400 aa16.15■□□□□ 0.18
SDC1-203ENST00000403076 SMAD9O15198 467 aaKnown RBP16.15■□□□□ 0.18
SDC1-203ENST00000403076 FZD7O75084 574 aa16.15■□□□□ 0.18
SDC1-203ENST00000403076 VAMP5O95183 116 aa16.15■□□□□ 0.18
SDC1-203ENST00000403076 EDN3P14138 238 aa16.15■□□□□ 0.18
SDC1-203ENST00000403076 EPHA2P29317 976 aa16.15■□□□□ 0.18
SDC1-203ENST00000403076 HSPA13P48723 471 aa16.15■□□□□ 0.18
SDC1-203ENST00000403076 FXYD6P3P58550 94 aa16.15■□□□□ 0.18
SDC1-203ENST00000403076 CTXN1P60606 82 aa16.15■□□□□ 0.18
SDC1-203ENST00000403076 H3F3AP84243 136 aa16.15■□□□□ 0.18
SDC1-203ENST00000403076 ZP4Q12836 540 aa16.15■□□□□ 0.18
SDC1-203ENST00000403076 GINS1Q14691 196 aa16.15■□□□□ 0.18
SDC1-203ENST00000403076 PTGES3Q15185 160 aaKnown RBP16.15■□□□□ 0.18
SDC1-203ENST00000403076 MS4A18Q3C1V0 323 aa16.15■□□□□ 0.18
SDC1-203ENST00000403076 Q6ZPB1 254 aaPredicted RBP16.15■□□□□ 0.18
SDC1-203ENST00000403076 P4HA3Q7Z4N8 544 aa16.15■□□□□ 0.18
SDC1-203ENST00000403076 FGD2Q7Z6J4 655 aa16.15■□□□□ 0.18
SDC1-203ENST00000403076 IQCF1Q8N6M8 205 aa16.15■□□□□ 0.18
SDC1-203ENST00000403076 LSM14AQ8ND56 463 aaKnown RBP16.15■□□□□ 0.18
SDC1-203ENST00000403076 OR8D4Q8NGM9 314 aa16.15■□□□□ 0.18
SDC1-203ENST00000403076 ZPLD1Q8TCW7 415 aa16.15■□□□□ 0.18
SDC1-203ENST00000403076 TRIB1Q96RU8 372 aa16.15■□□□□ 0.18
SDC1-203ENST00000403076 MBOAT4Q96T53 435 aa16.15■□□□□ 0.18
SDC1-203ENST00000403076 TEX12Q9BXU0 123 aa16.15■□□□□ 0.18
SDC1-203ENST00000403076 FAM118AQ9NWS6 357 aa16.15■□□□□ 0.18
SDC1-203ENST00000403076 ITPR1Q14643 2758 aa16.15■□□□□ 0.18
SDC1-203ENST00000403076 EPG5Q9HCE0 2579 aa16.15■□□□□ 0.18
SDC1-203ENST00000403076 AHRRA9YTQ3 701 aa16.14■□□□□ 0.18
SDC1-203ENST00000403076 MCIDASD6RGH6 385 aa16.14■□□□□ 0.18
SDC1-203ENST00000403076 DLGAP1O14490 977 aa16.14■□□□□ 0.18
SDC1-203ENST00000403076 RAMP1O60894 148 aa16.14■□□□□ 0.18
SDC1-203ENST00000403076 PLGP00747 810 aaPredicted RBP16.14■□□□□ 0.18
SDC1-203ENST00000403076 TSPAN19P0C672 248 aa16.14■□□□□ 0.18
SDC1-203ENST00000403076 GIPRP48546 466 aa16.14■□□□□ 0.18
SDC1-203ENST00000403076 TMEM236Q5W0B7 351 aa16.14■□□□□ 0.18
SDC1-203ENST00000403076 SLC27A4Q6P1M0 643 aa16.14■□□□□ 0.18
SDC1-203ENST00000403076 CD163Q86VB7 1156 aa16.14■□□□□ 0.18
SDC1-203ENST00000403076 CHERPQ8IWX8 916 aaKnown RBP16.14■□□□□ 0.18
SDC1-203ENST00000403076 UEVLDQ8IX04 471 aa16.14■□□□□ 0.18
SDC1-203ENST00000403076 MCEMP1Q8IX19 187 aa16.14■□□□□ 0.18
SDC1-203ENST00000403076 SLC43A2Q8N370 569 aa16.14■□□□□ 0.18
SDC1-203ENST00000403076 ANKK1Q8NFD2 765 aa16.14■□□□□ 0.18
SDC1-203ENST00000403076 OR2T33Q8NG76 320 aa16.14■□□□□ 0.18
SDC1-203ENST00000403076 FNDC9Q8TBE3 224 aa16.14■□□□□ 0.18
SDC1-203ENST00000403076 OXGR1Q96P68 337 aa16.14■□□□□ 0.18
SDC1-203ENST00000403076 ZNF184Q99676 751 aaPredicted RBP16.14■□□□□ 0.18
SDC1-203ENST00000403076 ADI1Q9BV57 179 aa16.14■□□□□ 0.18
SDC1-203ENST00000403076 POLDIP3Q9BY77 421 aaKnown RBP16.14■□□□□ 0.18
SDC1-203ENST00000403076 A0A1W2PRG6 482 aa16.14■□□□□ 0.17
SDC1-203ENST00000403076 SLC22A20A6NK97 555 aa16.14■□□□□ 0.17
SDC1-203ENST00000403076 FIGNL2A6NMB9 653 aa16.14■□□□□ 0.17
SDC1-203ENST00000403076 PRRG2O14669 202 aa16.14■□□□□ 0.17
SDC1-203ENST00000403076 PPP1R3DO95685 299 aa16.14■□□□□ 0.17
SDC1-203ENST00000403076 CD14P08571 375 aa16.14■□□□□ 0.17
SDC1-203ENST00000403076 ZNF43P17038 809 aa16.14■□□□□ 0.17
SDC1-203ENST00000403076 NOS3P29474 1203 aa16.14■□□□□ 0.17
SDC1-203ENST00000403076 P2RY4P51582 365 aa16.14■□□□□ 0.17
SDC1-203ENST00000403076 SMSP52788 366 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms