RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 AP3M1Q9Y2T2 418 aa3.52□□□□□ -1.85
HMGB1-204ENST00000399489 RIMS1Q86UR5 1692 aaKnown RBP3.52□□□□□ -1.85
HMGB1-204ENST00000399489 POLR3AO14802 1390 aaPredicted RBP3.52□□□□□ -1.85
HMGB1-204ENST00000399489 ROCK2O75116 1388 aaKnown RBP3.52□□□□□ -1.85
HMGB1-204ENST00000399489 STRCQ7RTU9 1775 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 CDHR2Q9BYE9 1310 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 SIGLEC1Q9BZZ2 1709 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 MYH14Q7Z406 1995 aaKnown RBP3.51□□□□□ -1.85
HMGB1-204ENST00000399489 CENPXA8MT69 81 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 E7EWF7 191 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 TOX3O15405 576 aaPredicted RBP3.51□□□□□ -1.85
HMGB1-204ENST00000399489 HSBP1O75506 76 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 KLK1P06870 262 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 BCKDHAP12694 445 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 GATA1P15976 413 aaPredicted RBP3.51□□□□□ -1.85
HMGB1-204ENST00000399489 EFNA1P20827 205 aaPredicted RBP3.51□□□□□ -1.85
HMGB1-204ENST00000399489 C21orf33P30042 268 aaPredicted RBP3.51□□□□□ -1.85
HMGB1-204ENST00000399489 IFNA8P32881 189 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 UGT1A3P35503 534 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 FEN1P39748 380 aaKnown RBP3.51□□□□□ -1.85
HMGB1-204ENST00000399489 CX3CR1P49238 355 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 CDH11P55287 796 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 DCDC1P59894 354 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 MRPS25P82663 173 aaKnown RBP3.51□□□□□ -1.85
HMGB1-204ENST00000399489 IL9RQ01113 521 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 PAX2Q02962 417 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 POU3F1Q03052 451 aaPredicted RBP3.51□□□□□ -1.85
HMGB1-204ENST00000399489 CYP24A1Q07973 514 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 RIPPLY1Q0D2K3 151 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 SCRN3Q0VDG4 424 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 RAB40BQ12829 278 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 RIGQ13278 110 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 ORC2Q13416 577 aaPredicted RBP3.51□□□□□ -1.85
HMGB1-204ENST00000399489 MADCAM1Q13477 382 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 GTF2H2Q13888 395 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 TRAM2Q15035 370 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 TSC22D1Q15714 1073 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 ASPRV1Q53RT3 343 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 CYBRD1Q53TN4 286 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 XKR6Q5GH73 641 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 SAMD4BQ5PRF9 694 aaKnown RBP3.51□□□□□ -1.85
HMGB1-204ENST00000399489 GTF2H2CQ6P1K8 395 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 RTL4Q6ZR62 310 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 SLC25A48Q6ZT89 311 aaKnown RBP3.51□□□□□ -1.85
HMGB1-204ENST00000399489 C18orf65Q6ZTR6 163 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 Q6ZVQ6 151 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 APTXQ7Z2E3 356 aaKnown RBP3.51□□□□□ -1.85
HMGB1-204ENST00000399489 SLC47A2Q86VL8 602 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 SFR1Q86XK3 245 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 ZNF677Q86XU0 584 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 ZNF100Q8IYN0 542 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 IQCKQ8N0W5 287 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 OR2L13Q8N349 312 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 ZNF786Q8N393 782 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 TMEM199Q8N511 208 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 RBMXL3Q8N7X1 1067 aaKnown RBP3.51□□□□□ -1.85
HMGB1-204ENST00000399489 OR56A4Q8NGH8 313 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 AENQ8WTP8 325 aaKnown RBP3.51□□□□□ -1.85
HMGB1-204ENST00000399489 NTNG2Q96CW9 530 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 LPAR4Q99677 370 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 ATP5SQ99766 215 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 ULBP2Q9BZM5 246 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 C6orf62Q9GZU0 229 aaPredicted RBP3.51□□□□□ -1.85
HMGB1-204ENST00000399489 KIR3DX1Q9H7L2 352 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 ANKHQ9HCJ1 492 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 C19orf25Q9UFG5 118 aaPredicted RBP3.51□□□□□ -1.85
HMGB1-204ENST00000399489 APOBEC3BQ9UH17 382 aaKnown RBP3.51□□□□□ -1.85
HMGB1-204ENST00000399489 ELF5Q9UKW6 265 aaPredicted RBP3.51□□□□□ -1.85
HMGB1-204ENST00000399489 AGO1Q9UL18 857 aaKnown RBP3.51□□□□□ -1.85
HMGB1-204ENST00000399489 SPATA2Q9UM82 520 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 DHRS7Q9Y394 339 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 CACNG2Q9Y698 323 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 CDH10Q9Y6N8 788 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 V9GYQ6 96 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 USP47Q96K76 1375 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 ABCA9Q8IUA7 1624 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 NEDD4P46934 1319 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 POGZQ7Z3K3 1410 aa3.51□□□□□ -1.85
HMGB1-204ENST00000399489 ARHGEF12Q9NZN5 1544 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 A0A0G2JLW4 131 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 TMEM213A2RRL7 107 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 CLEC18AA5D8T8 446 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 SIGLEC5O15389 551 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 PPIHO43447 177 aaKnown RBP3.5□□□□□ -1.85
HMGB1-204ENST00000399489 SLC19A2O60779 497 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 NDUFB8O95169 186 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 C1orf105O95561 183 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 AP2A1O95782 977 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 ANGPTL1O95841 491 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 ASS1P00966 412 aaKnown RBP3.5□□□□□ -1.85
HMGB1-204ENST00000399489 OAS1P00973 400 aaKnown RBP3.5□□□□□ -1.85
HMGB1-204ENST00000399489 SNRPAP09012 282 aaKnown RBP3.5□□□□□ -1.85
HMGB1-204ENST00000399489 HBQ1P09105 142 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 OCMP0CE72 109 aaPredicted RBP3.5□□□□□ -1.85
HMGB1-204ENST00000399489 DPEP1P16444 411 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 MAGP20916 626 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 ATP5A1P25705 553 aaKnown RBP3.5□□□□□ -1.85
HMGB1-204ENST00000399489 RPL4P36578 427 aaKnown RBP3.5□□□□□ -1.85
HMGB1-204ENST00000399489 ACVR1BP36896 505 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 CEACAM3P40198 252 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms