RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 FGF20Q9NP95 211 aaPredicted RBP9.23□□□□□ -0.93
VPS53-202ENST00000389040 C20orf141Q9NUB4 165 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 NDUFB11Q9NX14 153 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 DNAJB12Q9NXW2 375 aaKnown RBP9.23□□□□□ -0.93
VPS53-202ENST00000389040 KLRF1Q9NZS2 232 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 IL20RAQ9UHF4 553 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 A3GALT2U3KPV4 340 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 A0A0B4J2E0 115 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 A0A1B0GX12 115 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 KPNA4O00629 521 aaPredicted RBP9.23□□□□□ -0.93
VPS53-202ENST00000389040 GPX5O75715 221 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 HMGN1P05114 100 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 IFI30P13284 250 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 ZNF24P17028 368 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 MAKP20794 623 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 MEOX1P50221 254 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 ETV1P50549 477 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 CDH11P55287 796 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 ITGADQ13349 1161 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 INPP5JQ15735 1006 aaPredicted RBP9.23□□□□□ -0.93
VPS53-202ENST00000389040 AADACL4Q5VUY2 407 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 ZNF324BQ6AW86 544 aaPredicted RBP9.23□□□□□ -0.93
VPS53-202ENST00000389040 TIGD3Q6B0B8 471 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.23□□□□□ -0.93
VPS53-202ENST00000389040 OR9Q1Q8NGQ5 310 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 OR1J4Q8NGS1 313 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 OR4C3Q8NH37 302 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 GRHL3Q8TE85 626 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 NXF2Q9GZY0 626 aaKnown RBP9.23□□□□□ -0.93
VPS53-202ENST00000389040 UBQLN3Q9H347 655 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 ACKR4Q9NPB9 350 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 CHCHD3Q9NX63 227 aaKnown RBP9.23□□□□□ -0.93
VPS53-202ENST00000389040 TMEM5Q9Y2B1 443 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 CARD8Q9Y2G2 431 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 MED31Q9Y3C7 131 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 WIF1Q9Y5W5 379 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 DOCK10Q96BY6 2186 aa9.23□□□□□ -0.93
VPS53-202ENST00000389040 CPAMD8Q8IZJ3 1885 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 BOD1L1Q8NFC6 3051 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 PIEZO2Q9H5I5 2752 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 TMEM129A0AVI4 362 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 SNPHO15079 494 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 MAGEB3O15480 346 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 NDUFB5O43674 189 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 CHP2O43745 196 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 SULT1C4O75897 302 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 APOL3O95236 402 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 PSMA1P25786 263 aaKnown RBP9.22□□□□□ -0.93
VPS53-202ENST00000389040 PTGDSP41222 190 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 CTBP2P56545 445 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 FGFBP1Q14512 234 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 RGS21Q2M5E4 152 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.22□□□□□ -0.93
VPS53-202ENST00000389040 RPL13AP3Q6NVV1 102 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 GDPGP1Q6ZNW5 385 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 TMPRSS11FQ6ZWK6 438 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 PLCZ1Q86YW0 608 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 CDK20Q8IZL9 346 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 FAM109AQ8N4B1 249 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 OR52L1Q8NGH7 329 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 B4GALNT2Q8NHY0 566 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 SLC35B4Q969S0 331 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 SNRNP40Q96DI7 357 aaKnown RBP9.22□□□□□ -0.93
VPS53-202ENST00000389040 BPIFA2Q96DR5 249 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 ARSGQ96EG1 525 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 HS6ST2Q96MM7 605 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 CDADC1Q9BWV3 514 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 TTTY12Q9BZ98 90 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 TRIM2Q9C040 744 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 C6orf62Q9GZU0 229 aaPredicted RBP9.22□□□□□ -0.93
VPS53-202ENST00000389040 OR52D1Q9H346 318 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 PTGES2Q9H7Z7 377 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 ZDHHC11Q9H8X9 412 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.22□□□□□ -0.93
VPS53-202ENST00000389040 DEPPQ9NTK1 212 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 FLRT3Q9NZU0 649 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 SEC14L4Q9UDX3 406 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 SLC35A3Q9Y2D2 325 aa9.22□□□□□ -0.93
VPS53-202ENST00000389040 EXOSC1Q9Y3B2 195 aaKnown RBP9.22□□□□□ -0.93
VPS53-202ENST00000389040 IGSF10Q6WRI0 2623 aa9.21□□□□□ -0.93
VPS53-202ENST00000389040 A0A1B0GWA3 101 aa9.21□□□□□ -0.93
VPS53-202ENST00000389040 LINC01387J3KSC0 135 aa9.21□□□□□ -0.93
VPS53-202ENST00000389040 SUSD5O60279 629 aa9.21□□□□□ -0.93
VPS53-202ENST00000389040 EIF4E2O60573 245 aaKnown RBP9.21□□□□□ -0.93
VPS53-202ENST00000389040 PFDN1O60925 122 aa9.21□□□□□ -0.93
VPS53-202ENST00000389040 SLC2A10O95528 541 aa9.21□□□□□ -0.93
VPS53-202ENST00000389040 EDN3P14138 238 aa9.21□□□□□ -0.93
VPS53-202ENST00000389040 FUT1P19526 365 aa9.21□□□□□ -0.93
VPS53-202ENST00000389040 HTR1FP30939 366 aa9.21□□□□□ -0.93
VPS53-202ENST00000389040 SOX6P35712 828 aa9.21□□□□□ -0.93
VPS53-202ENST00000389040 ACAA2P42765 397 aaKnown RBP9.21□□□□□ -0.93
VPS53-202ENST00000389040 SUMO3P55854 103 aaPredicted RBP9.21□□□□□ -0.93
VPS53-202ENST00000389040 WNT4P56705 351 aa9.21□□□□□ -0.93
VPS53-202ENST00000389040 FXYD6P3P58550 94 aa9.21□□□□□ -0.93
VPS53-202ENST00000389040 PLGLB1Q02325 96 aa9.21□□□□□ -0.93
VPS53-202ENST00000389040 SLC10A1Q14973 349 aa9.21□□□□□ -0.93
VPS53-202ENST00000389040 GLYR1Q49A26 553 aaPredicted RBP9.21□□□□□ -0.93
VPS53-202ENST00000389040 PRAMEF20Q5VT98 475 aa9.21□□□□□ -0.93
VPS53-202ENST00000389040 LIPKQ5VXJ0 399 aa9.21□□□□□ -0.93
VPS53-202ENST00000389040 NXNL2Q5VZ03 156 aa9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms