RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 ZNF684Q5T5D7 378 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 PYHIN1Q6K0P9 492 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 JAZF1Q86VZ6 243 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 ZNF511Q8NB15 262 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 OR4D9Q8NGE8 314 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 RNF170Q96K19 258 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 GAL3ST4Q96RP7 486 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 LPAR4Q99677 370 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 NRSN2Q9GZP1 204 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 LAT2Q9GZY6 243 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 ADAM19Q9H013 955 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 SLC6A5Q9Y345 797 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 ABCA7Q8IZY2 2146 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 EML5Q05BV3 1969 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 A0A1B0GVT2 93 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 CPNE3O75131 537 aaKnown RBP18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 PIAS2O75928 621 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 F13BP05160 661 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 SNRPBP14678 240 aaKnown RBP18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 GRPRP30550 384 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 SDHAP31040 664 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 ARL4DP49703 201 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 CD83Q01151 205 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 ELAVL1Q15717 326 aaKnown RBP18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 CCDC85BQ15834 202 aaPredicted RBP18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 OVCH1Q7RTY7 1134 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 SLC7A5P1Q8MH63 180 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 LSM14AQ8ND56 463 aaKnown RBP18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 ZNF563Q8TA94 476 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 RPS4Y2Q8TD47 263 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 RNF166Q96A37 237 aaPredicted RBP18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 FOXQ1Q9C009 403 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 RXFP3Q9NSD7 469 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 ABRACLQ9P1F3 81 aa18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 AK6Q9Y3D8 172 aaKnown RBP18.96■□□□□ 0.63
CCDC88B-203ENST00000359902 PSMD9O00233 223 aa18.95■□□□□ 0.62
CCDC88B-203ENST00000359902 EEF1E1O43324 174 aaKnown RBP18.95■□□□□ 0.62
CCDC88B-203ENST00000359902 GPRIN2O60269 458 aa18.95■□□□□ 0.62
CCDC88B-203ENST00000359902 SLC6A1P30531 599 aa18.95■□□□□ 0.62
CCDC88B-203ENST00000359902 SNAP47Q5SQN1 464 aa18.95■□□□□ 0.62
CCDC88B-203ENST00000359902 SEC16AO15027 2179 aa18.95■□□□□ 0.62
CCDC88B-203ENST00000359902 TCRBV16S1A1N1A0A5B0 115 aa18.95■□□□□ 0.62
CCDC88B-203ENST00000359902 CDC14CA4D256 554 aa18.95■□□□□ 0.62
CCDC88B-203ENST00000359902 ORC5O43913 435 aa18.95■□□□□ 0.62
CCDC88B-203ENST00000359902 TXNDC12O95881 172 aa18.95■□□□□ 0.62
CCDC88B-203ENST00000359902 NANOS3P60323 173 aaKnown RBP18.95■□□□□ 0.62
CCDC88B-203ENST00000359902 MRPS15P82914 257 aaKnown RBP18.95■□□□□ 0.62
CCDC88B-203ENST00000359902 ZNF117Q03924 483 aa18.95■□□□□ 0.62
CCDC88B-203ENST00000359902 ZP2Q05996 745 aa18.95■□□□□ 0.62
CCDC88B-203ENST00000359902 VWA2Q5GFL6 755 aa18.95■□□□□ 0.62
CCDC88B-203ENST00000359902 TAAR8Q969N4 342 aa18.95■□□□□ 0.62
CCDC88B-203ENST00000359902 CLEC4AQ9UMR7 237 aa18.95■□□□□ 0.62
CCDC88B-203ENST00000359902 FOLR1P15328 257 aa18.94■□□□□ 0.62
CCDC88B-203ENST00000359902 S100A1P23297 94 aa18.94■□□□□ 0.62
CCDC88B-203ENST00000359902 RPL18Q07020 188 aaKnown RBP18.94■□□□□ 0.62
CCDC88B-203ENST00000359902 EBPQ15125 230 aaKnown RBP18.94■□□□□ 0.62
CCDC88B-203ENST00000359902 HSD17B12Q53GQ0 312 aa18.94■□□□□ 0.62
CCDC88B-203ENST00000359902 SLC16A9Q7RTY1 509 aa18.94■□□□□ 0.62
CCDC88B-203ENST00000359902 NOXA1Q86UR1 476 aa18.94■□□□□ 0.62
CCDC88B-203ENST00000359902 C9orf40Q8IXQ3 194 aa18.94■□□□□ 0.62
CCDC88B-203ENST00000359902 ABCG5Q9H222 651 aa18.94■□□□□ 0.62
CCDC88B-203ENST00000359902 BRD7Q9NPI1 651 aa18.94■□□□□ 0.62
CCDC88B-203ENST00000359902 MOKQ9UQ07 419 aa18.94■□□□□ 0.62
CCDC88B-203ENST00000359902 FAM172BPA6NC97 362 aa18.94■□□□□ 0.62
CCDC88B-203ENST00000359902 PIN1P1O15428 100 aa18.94■□□□□ 0.62
CCDC88B-203ENST00000359902 GMFGO60234 142 aa18.94■□□□□ 0.62
CCDC88B-203ENST00000359902 PLA1AQ53H76 456 aa18.94■□□□□ 0.62
CCDC88B-203ENST00000359902 NUP54Q7Z3B4 507 aa18.94■□□□□ 0.62
CCDC88B-203ENST00000359902 PHYHIPQ92561 330 aa18.94■□□□□ 0.62
CCDC88B-203ENST00000359902 CREB3L1Q96BA8 519 aa18.94■□□□□ 0.62
CCDC88B-203ENST00000359902 UBE2ZQ9H832 354 aaPredicted RBP18.94■□□□□ 0.62
CCDC88B-203ENST00000359902 C12orf10Q9HB07 376 aa18.94■□□□□ 0.62
CCDC88B-203ENST00000359902 ZNF304Q9HCX3 659 aa18.94■□□□□ 0.62
CCDC88B-203ENST00000359902 SRA1Q9HD15 236 aaKnown RBP18.94■□□□□ 0.62
CCDC88B-203ENST00000359902 NOX4Q9NPH5 578 aa18.94■□□□□ 0.62
CCDC88B-203ENST00000359902 LAMA1P25391 3075 aa18.93■□□□□ 0.62
CCDC88B-203ENST00000359902 SPAG17Q6Q759 2223 aa18.93■□□□□ 0.62
CCDC88B-203ENST00000359902 C17orf51A8MQB3 221 aa18.93■□□□□ 0.62
CCDC88B-203ENST00000359902 INMT-MINDY4F8WBC2 141 aa18.93■□□□□ 0.62
CCDC88B-203ENST00000359902 DCTN6O00399 190 aa18.93■□□□□ 0.62
CCDC88B-203ENST00000359902 HCRTR2O43614 444 aa18.93■□□□□ 0.62
CCDC88B-203ENST00000359902 SRMP19623 302 aa18.93■□□□□ 0.62
CCDC88B-203ENST00000359902 SLC6A8P48029 635 aa18.93■□□□□ 0.62
CCDC88B-203ENST00000359902 DCAF7P61962 342 aa18.93■□□□□ 0.62
CCDC88B-203ENST00000359902 NSDHLQ15738 373 aa18.93■□□□□ 0.62
CCDC88B-203ENST00000359902 SLC36A2Q495M3 483 aa18.93■□□□□ 0.62
CCDC88B-203ENST00000359902 MARCH3Q86UD3 253 aa18.93■□□□□ 0.62
CCDC88B-203ENST00000359902 PLXDC1Q8IUK5 500 aa18.93■□□□□ 0.62
CCDC88B-203ENST00000359902 CARFQ8N187 725 aa18.93■□□□□ 0.62
CCDC88B-203ENST00000359902 D2HGDHQ8N465 521 aa18.93■□□□□ 0.62
CCDC88B-203ENST00000359902 HAVCR2Q8TDQ0 301 aa18.93■□□□□ 0.62
CCDC88B-203ENST00000359902 GRHPRQ9UBQ7 328 aa18.93■□□□□ 0.62
CCDC88B-203ENST00000359902 KLHDC2Q9Y2U9 406 aa18.93■□□□□ 0.62
CCDC88B-203ENST00000359902 ZNF281Q9Y2X9 895 aa18.93■□□□□ 0.62
CCDC88B-203ENST00000359902 ZNF879B4DU55 563 aa18.92■□□□□ 0.62
CCDC88B-203ENST00000359902 NUDT21O43809 227 aaKnown RBP18.92■□□□□ 0.62
CCDC88B-203ENST00000359902 TRIM3O75382 744 aaPredicted RBP18.92■□□□□ 0.62
CCDC88B-203ENST00000359902 FBLP22087 321 aaKnown RBP18.92■□□□□ 0.62
CCDC88B-203ENST00000359902 LCN1P31025 176 aa18.92■□□□□ 0.62
CCDC88B-203ENST00000359902 NR0B1P51843 470 aaKnown RBP18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms