RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 HDAC8Q9BY41 377 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 TRPV4Q9HBA0 871 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 WBP1LQ9NX94 342 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 THAP10Q9P2Z0 257 aaPredicted RBP20.51■□□□□ 0.87
TRIM28-202ENST00000341753 MEIS3P1A6NDR6 274 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 GOSR2O14653 212 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 PLATP00750 562 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 HIST1H2ABP04908 130 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 AK4P27144 223 aaPredicted RBP20.51■□□□□ 0.87
TRIM28-202ENST00000341753 SLC6A6P31641 620 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 TPMTP51580 245 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 POU4F2Q12837 409 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 RUNX3Q13761 415 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 CST6Q15828 149 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 HIST3H2AQ7L7L0 130 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 ZNF454Q8N9F8 522 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 BVESQ8NE79 360 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 OR4D10Q8NGI6 311 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 SLC2A12Q8TD20 617 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 HIST1H2ACQ93077 130 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 TMEM27Q9HBJ8 222 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 V9GY05 133 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 KRBOX1C9JBD0 128 aa20.5■□□□□ 0.87
TRIM28-202ENST00000341753 PRICKLE3O43900 615 aaPredicted RBP20.5■□□□□ 0.87
TRIM28-202ENST00000341753 NDUFB6O95139 128 aa20.5■□□□□ 0.87
TRIM28-202ENST00000341753 ZFPL1O95159 310 aa20.5■□□□□ 0.87
TRIM28-202ENST00000341753 AGR2O95994 175 aa20.5■□□□□ 0.87
TRIM28-202ENST00000341753 GABRA1P14867 456 aa20.5■□□□□ 0.87
TRIM28-202ENST00000341753 TNFRSF17Q02223 184 aa20.5■□□□□ 0.87
TRIM28-202ENST00000341753 RUNX2Q13950 521 aa20.5■□□□□ 0.87
TRIM28-202ENST00000341753 ARHGAP11AQ6P4F7 1023 aa20.5■□□□□ 0.87
TRIM28-202ENST00000341753 OPN4Q9UHM6 478 aa20.5■□□□□ 0.87
TRIM28-202ENST00000341753 HRH3Q9Y5N1 445 aa20.5■□□□□ 0.87
TRIM28-202ENST00000341753 B3GALNT1O75752 331 aa20.5■□□□□ 0.87
TRIM28-202ENST00000341753 C9orf50Q5SZB4 431 aa20.5■□□□□ 0.87
TRIM28-202ENST00000341753 OR1S1Q8NH92 325 aa20.5■□□□□ 0.87
TRIM28-202ENST00000341753 ST8SIA2Q92186 375 aa20.5■□□□□ 0.87
TRIM28-202ENST00000341753 DPYSL5Q9BPU6 564 aa20.5■□□□□ 0.87
TRIM28-202ENST00000341753 TMEM106CQ9BVX2 250 aa20.5■□□□□ 0.87
TRIM28-202ENST00000341753 TRIOO75962 3097 aa20.5■□□□□ 0.87
TRIM28-202ENST00000341753 GLULP15104 373 aa20.49■□□□□ 0.87
TRIM28-202ENST00000341753 GABRA3P34903 492 aa20.49■□□□□ 0.87
TRIM28-202ENST00000341753 PBX2P40425 430 aa20.49■□□□□ 0.87
TRIM28-202ENST00000341753 TAS2R20P59543 309 aa20.49■□□□□ 0.87
TRIM28-202ENST00000341753 HYAL4Q2M3T9 481 aa20.49■□□□□ 0.87
TRIM28-202ENST00000341753 YOD1Q5VVQ6 348 aaPredicted RBP20.49■□□□□ 0.87
TRIM28-202ENST00000341753 OLFML2AQ68BL7 652 aa20.49■□□□□ 0.87
TRIM28-202ENST00000341753 GSG1LQ6UXU4 331 aa20.49■□□□□ 0.87
TRIM28-202ENST00000341753 SYS1Q8N2H4 156 aa20.49■□□□□ 0.87
TRIM28-202ENST00000341753 TRBV23OR9-2A0A075B6M9 112 aa20.49■□□□□ 0.87
TRIM28-202ENST00000341753 OR6C65A6NJZ3 312 aa20.49■□□□□ 0.87
TRIM28-202ENST00000341753 ZNF749O43361 778 aa20.49■□□□□ 0.87
TRIM28-202ENST00000341753 FGF2P09038 288 aa20.49■□□□□ 0.87
TRIM28-202ENST00000341753 RPS4Y1P22090 263 aaKnown RBP20.49■□□□□ 0.87
TRIM28-202ENST00000341753 RPL4P36578 427 aaKnown RBP20.49■□□□□ 0.87
TRIM28-202ENST00000341753 GK2Q14410 553 aaPredicted RBP20.49■□□□□ 0.87
TRIM28-202ENST00000341753 GRM7Q14831 915 aa20.49■□□□□ 0.87
TRIM28-202ENST00000341753 UNQ9370/PRO34162Q6UXP9 181 aa20.49■□□□□ 0.87
TRIM28-202ENST00000341753 EXOSC3Q9NQT5 275 aaKnown RBP20.49■□□□□ 0.87
TRIM28-202ENST00000341753 SMAD9O15198 467 aaKnown RBP20.48■□□□□ 0.87
TRIM28-202ENST00000341753 CMPK1P30085 196 aa20.48■□□□□ 0.87
TRIM28-202ENST00000341753 EMDP50402 254 aa20.48■□□□□ 0.87
TRIM28-202ENST00000341753 PON3Q15166 354 aa20.48■□□□□ 0.87
TRIM28-202ENST00000341753 ZNF613Q6PF04 617 aa20.48■□□□□ 0.87
TRIM28-202ENST00000341753 NUDT18Q6ZVK8 323 aa20.48■□□□□ 0.87
TRIM28-202ENST00000341753 OR8K3Q8NH51 312 aa20.48■□□□□ 0.87
TRIM28-202ENST00000341753 FBXL3Q9UKT7 428 aa20.48■□□□□ 0.87
TRIM28-202ENST00000341753 A0A1B0GTH9 108 aa20.48■□□□□ 0.87
TRIM28-202ENST00000341753 CPMP14384 443 aa20.48■□□□□ 0.87
TRIM28-202ENST00000341753 PPP3CBP16298 524 aa20.48■□□□□ 0.87
TRIM28-202ENST00000341753 ITPKBP27987 946 aa20.48■□□□□ 0.87
TRIM28-202ENST00000341753 ODF4Q2M2E3 257 aa20.48■□□□□ 0.87
TRIM28-202ENST00000341753 PCGF3Q3KNV8 242 aa20.48■□□□□ 0.87
TRIM28-202ENST00000341753 STK35Q8TDR2 534 aa20.48■□□□□ 0.87
TRIM28-202ENST00000341753 CHRNA9Q9UGM1 479 aa20.48■□□□□ 0.87
TRIM28-202ENST00000341753 ICAM5Q9UMF0 924 aa20.48■□□□□ 0.87
TRIM28-202ENST00000341753 P2RX6O15547 441 aa20.47■□□□□ 0.87
TRIM28-202ENST00000341753 RLN2P04090 185 aa20.47■□□□□ 0.87
TRIM28-202ENST00000341753 ALG10BQ5I7T1 473 aa20.47■□□□□ 0.87
TRIM28-202ENST00000341753 PNPLA2Q96AD5 504 aa20.47■□□□□ 0.87
TRIM28-202ENST00000341753 RASD2Q96D21 266 aa20.47■□□□□ 0.87
TRIM28-202ENST00000341753 NKX3-1Q99801 234 aaPredicted RBP20.47■□□□□ 0.87
TRIM28-202ENST00000341753 TMPRSS13Q9BYE2 586 aa20.47■□□□□ 0.87
TRIM28-202ENST00000341753 LDAHQ9H6V9 325 aa20.47■□□□□ 0.87
TRIM28-202ENST00000341753 TMEM138Q9NPI0 162 aa20.47■□□□□ 0.87
TRIM28-202ENST00000341753 IFT46Q9NQC8 304 aa20.47■□□□□ 0.87
TRIM28-202ENST00000341753 A0A0B4J2E0 115 aa20.47■□□□□ 0.87
TRIM28-202ENST00000341753 A0A1B0GX12 115 aa20.47■□□□□ 0.87
TRIM28-202ENST00000341753 ADRA2CP18825 462 aa20.47■□□□□ 0.87
TRIM28-202ENST00000341753 ART1P52961 327 aa20.47■□□□□ 0.87
TRIM28-202ENST00000341753 KCNAB1Q14722 419 aa20.47■□□□□ 0.87
TRIM28-202ENST00000341753 ETFDHQ16134 617 aa20.47■□□□□ 0.87
TRIM28-202ENST00000341753 ZNF660Q6AZW8 331 aaPredicted RBP20.47■□□□□ 0.87
TRIM28-202ENST00000341753 PRSS41Q7RTY9 318 aa20.47■□□□□ 0.87
TRIM28-202ENST00000341753 MOKQ9UQ07 419 aa20.47■□□□□ 0.87
TRIM28-202ENST00000341753 ZNF281Q9Y2X9 895 aa20.47■□□□□ 0.87
TRIM28-202ENST00000341753 MYO15AQ9UKN7 3530 aa20.47■□□□□ 0.87
TRIM28-202ENST00000341753 ACOT7O00154 380 aa20.47■□□□□ 0.87
TRIM28-202ENST00000341753 DLX5P56178 289 aa20.47■□□□□ 0.87
TRIM28-202ENST00000341753 GUCA2AQ02747 115 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms