RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 SURF4O15260 269 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 AP1G1O43747 822 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 IFNGR1P15260 489 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 TIMP2P16035 220 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 NPY4RP50391 375 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 TIGD3Q6B0B8 471 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 OR10K2Q6IF99 312 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 H3F3CQ6NXT2 135 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 CNKSR3Q6P9H4 555 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 TRAPPC6BQ86SZ2 158 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 GPR137CQ8N3F9 429 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 CPXM2Q8N436 756 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 ADAMTS14Q8WXS8 1223 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 DCLRE1CQ96SD1 692 aaKnown RBP8.07□□□□□ -1.12
RTN3-202ENST00000339997 NICN1Q9BSH3 213 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 TINAGL1Q9GZM7 467 aaPredicted RBP8.07□□□□□ -1.12
RTN3-202ENST00000339997 WWTR1Q9GZV5 400 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 M0QZQ0 153 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 MPPED1O15442 326 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 PRAF2O60831 178 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 OR7C1O76099 320 aaPredicted RBP8.07□□□□□ -1.12
RTN3-202ENST00000339997 RRASP10301 218 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 S100A11P31949 105 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 INSL4Q14641 139 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 MELKQ14680 651 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 SLC36A2Q495M3 483 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 SLX4IPQ5VYV7 408 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 TMEM184AQ6ZMB5 413 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 ZNF619Q8N2I2 560 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 RASD2Q96D21 266 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 C14orf79Q96F83 325 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 TRMT2BQ96GJ1 504 aaKnown RBP8.07□□□□□ -1.12
RTN3-202ENST00000339997 TSSK2Q96PF2 358 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 HIPK2Q9H2X6 1198 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 HAO2Q9NYQ3 351 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 MYH14Q7Z406 1995 aaKnown RBP8.07□□□□□ -1.12
RTN3-202ENST00000339997 LRIT2A6NDA9 550 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 SCGB1D1O95968 90 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 HTR3AP46098 478 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 TPMTP51580 245 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 RNF4P78317 190 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 ZNF33BQ06732 778 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 TSPAN31Q12999 210 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 TRIM61Q5EBN2 209 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 MPP7Q5T2T1 576 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 HBMQ6B0K9 141 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 PLEKHA3Q9HB20 300 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 ING1Q9UK53 422 aaPredicted RBP8.07□□□□□ -1.12
RTN3-202ENST00000339997 BACE2Q9Y5Z0 518 aa8.07□□□□□ -1.12
RTN3-202ENST00000339997 NCOR1O75376 2440 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 POLEQ07864 2286 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 RAB27BO00194 218 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 SCAF4O95104 1147 aaKnown RBP8.06□□□□□ -1.12
RTN3-202ENST00000339997 PMP2P02689 132 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 ZNF84P51523 738 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 P2RX3P56373 397 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 UBE2KP61086 200 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 C4orf17Q53FE4 359 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 GLYATL3Q5SZD4 288 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 FAM69AQ5T7M9 428 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 TMPPEQ6ZT21 453 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 KIAA1143Q96AT1 154 aaPredicted RBP8.06□□□□□ -1.12
RTN3-202ENST00000339997 ALG12Q9BV10 488 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 SAMD10Q9BYL1 202 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 MVB12BQ9H7P6 319 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 SDHAF2Q9NX18 166 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 HHLA2Q9UM44 414 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 ZNF593O00488 134 aaPredicted RBP8.06□□□□□ -1.12
RTN3-202ENST00000339997 SELENOFO60613 162 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 APBB3O95704 486 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 SBK3P0C264 359 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 FBLP22087 321 aaKnown RBP8.06□□□□□ -1.12
RTN3-202ENST00000339997 P2RY2P41231 377 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 PSPHP78330 225 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 CYCSP99999 105 aaKnown RBP8.06□□□□□ -1.12
RTN3-202ENST00000339997 CAMK2DQ13557 499 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 DEFB133Q30KQ1 61 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 PTRH1Q86Y79 214 aaKnown RBP8.06□□□□□ -1.12
RTN3-202ENST00000339997 OR4Q3Q8NH05 313 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 OR52I2Q8NH67 350 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 PFN4Q8NHR9 129 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 FAM174AQ8TBP5 190 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 DYNC2LI1Q8TCX1 351 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 TMED6Q8WW62 240 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 Q96M85 177 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 ZNF587Q96SQ5 575 aaPredicted RBP8.06□□□□□ -1.12
RTN3-202ENST00000339997 SYT3Q9BQG1 590 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 DNTTIP1Q9H147 329 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 C20orf85Q9H1P6 137 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 GLIPR2Q9H4G4 154 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 OPA3Q9H6K4 179 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 PATZ1Q9HBE1 687 aaKnown RBP8.06□□□□□ -1.12
RTN3-202ENST00000339997 ZNF443Q9Y2A4 671 aaPredicted RBP8.06□□□□□ -1.12
RTN3-202ENST00000339997 SLC35A3Q9Y2D2 325 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 USP3Q9Y6I4 520 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 DDX60LQ5H9U9 1706 aaKnown RBP8.06□□□□□ -1.12
RTN3-202ENST00000339997 B4DXG7 233 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 H0Y8G0 127 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 H7C1Q1 480 aa8.06□□□□□ -1.12
RTN3-202ENST00000339997 C1SP09871 688 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms