RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 DOCK10Q96BY6 2186 aa13.96□□□□□ -0.17
LIMS1-202ENST00000338045 CNOT1A5YKK6 2376 aaKnown RBP13.96□□□□□ -0.17
LIMS1-202ENST00000338045 GVINP1Q7Z2Y8 2422 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 TMEM129A0AVI4 362 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 SHISA8B8ZZ34 492 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 NOL3O60936 208 aaKnown RBP13.95□□□□□ -0.18
LIMS1-202ENST00000338045 TRIM3O75382 744 aaPredicted RBP13.95□□□□□ -0.18
LIMS1-202ENST00000338045 ATE1O95260 518 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 F13BP05160 661 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 LIPCP11150 499 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 NAT2P11245 290 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 LIFP15018 202 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 MYL12AP19105 171 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 GRPRP30550 384 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 ETV1P50549 477 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 PSMD7P51665 324 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 MFSD13AQ14CX5 517 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 SPHARQ15513 63 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 CTF1Q16619 201 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 SLC6A19Q695T7 634 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 TIGD3Q6B0B8 471 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 PAQR6Q6TCH4 344 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 P2RY8Q86VZ1 359 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 FAM98AQ8NCA5 519 aaKnown RBP13.95□□□□□ -0.18
LIMS1-202ENST00000338045 OR4F15Q8NGB8 312 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 SLC25A36Q96CQ1 311 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 RASD2Q96D21 266 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 FER1L6-AS2Q96M78 137 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 Q96M85 177 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 MGLLQ99685 303 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 ZNF649Q9BS31 505 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 NMNAT2Q9BZQ4 307 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 SERINC1Q9NRX5 453 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 SEC14L4Q9UDX3 406 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 TEKT2Q9UIF3 430 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 CORINQ9Y5Q5 1042 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 TEX13CA0A0J9YWL9 993 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 PLPP3O14495 311 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 SLC30A4O14863 429 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 LIMS3P0CW19 117 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 LIMS4P0CW20 117 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 CLUP10909 449 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 CD36P16671 472 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 IL11P20809 199 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 CYB561P49447 251 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 MED22Q15528 200 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 KLHL12Q53G59 568 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 ARMCX4Q5H9R4 360 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 GPR139Q6DWJ6 353 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 C3orf33Q6P1S2 294 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 SHFQ7M4L6 423 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 ERI1Q8IV48 349 aaKnown RBP13.95□□□□□ -0.18
LIMS1-202ENST00000338045 GTPBP8Q8N3Z3 284 aaPredicted RBP13.95□□□□□ -0.18
LIMS1-202ENST00000338045 SCAIQ8N9R8 606 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 PSD4Q8NDX1 1056 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 OR1J4Q8NGS1 313 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 DNAJA3Q96EY1 480 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 NMNAT3Q96T66 252 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 TSC22D3Q99576 134 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 OR51V1Q9H2C8 321 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 ANKRD10Q9NXR5 420 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 STMN3Q9NZ72 180 aa13.95□□□□□ -0.18
LIMS1-202ENST00000338045 CUL9Q8IWT3 2517 aa13.94□□□□□ -0.18
LIMS1-202ENST00000338045 OR6C68A6NDL8 312 aa13.94□□□□□ -0.18
LIMS1-202ENST00000338045 MYL12BO14950 172 aa13.94□□□□□ -0.18
LIMS1-202ENST00000338045 P04436 131 aa13.94□□□□□ -0.18
LIMS1-202ENST00000338045 FKBP2P26885 142 aaKnown RBP13.94□□□□□ -0.18
LIMS1-202ENST00000338045 DSCR4P56555 118 aaPredicted RBP13.94□□□□□ -0.18
LIMS1-202ENST00000338045 DYNC1I2Q13409 638 aaKnown RBP13.94□□□□□ -0.18
LIMS1-202ENST00000338045 C19orf48Q6RUI8 117 aa13.94□□□□□ -0.18
LIMS1-202ENST00000338045 B3GLCTQ6Y288 498 aa13.94□□□□□ -0.18
LIMS1-202ENST00000338045 ZNF417Q8TAU3 575 aa13.94□□□□□ -0.18
LIMS1-202ENST00000338045 SLC25A43Q8WUT9 341 aaPredicted RBP13.94□□□□□ -0.18
LIMS1-202ENST00000338045 GNRHR2Q96P88 292 aa13.94□□□□□ -0.18
LIMS1-202ENST00000338045 TSPAN32Q96QS1 320 aa13.94□□□□□ -0.18
LIMS1-202ENST00000338045 ZNF587Q96SQ5 575 aaPredicted RBP13.94□□□□□ -0.18
LIMS1-202ENST00000338045 ASPNQ9BXN1 380 aa13.94□□□□□ -0.18
LIMS1-202ENST00000338045 SACM1LQ9NTJ5 587 aa13.94□□□□□ -0.18
LIMS1-202ENST00000338045 TNFRSF10DQ9UBN6 386 aa13.94□□□□□ -0.18
LIMS1-202ENST00000338045 SPIN1Q9Y657 262 aaPredicted RBP13.94□□□□□ -0.18
LIMS1-202ENST00000338045 CBR3O75828 277 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 IGHMP01871 453 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 SCG5P05408 212 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 DPP4P27487 766 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 IDUAP35475 653 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 CDKN2AP42771 156 aaKnown RBP13.93□□□□□ -0.18
LIMS1-202ENST00000338045 RGS6P49758 472 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 SLC25A1P53007 311 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 ZP4Q12836 540 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 SELENBP1Q13228 472 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 CAMK2BQ13554 666 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 GGTLC2Q14390 218 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.93□□□□□ -0.18
LIMS1-202ENST00000338045 ABHD17BQ5VST6 288 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 ZNF485Q8NCK3 441 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 OR51G2Q8NGK0 314 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 OPALINQ96PE5 141 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 INIPQ9NRY2 104 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 GRHPRQ9UBQ7 328 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 FAM186AA6NE01 2351 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms