RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 PPP1R36Q96LQ0 422 aa12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 PLA2G12AQ9BZM1 189 aa12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 ROPN1BQ9BZX4 212 aaPredicted RBP12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 NELFAQ9H3P2 528 aa12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 OCEL1Q9H607 264 aa12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 ROPN1Q9HAT0 212 aaPredicted RBP12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 P2RX2Q9UBL9 471 aa12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 ZNF232Q9UNY5 417 aa12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 USP22Q9UPT9 525 aa12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 RAP2CQ9Y3L5 183 aa12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 SPEF1Q9Y4P9 236 aa12.78□□□□□ -0.36
CCDC88B-201ENST00000301897 TMEM129A0AVI4 362 aa12.77□□□□□ -0.37
CCDC88B-201ENST00000301897 SYNGR3O43761 229 aa12.77□□□□□ -0.37
CCDC88B-201ENST00000301897 AKAP8O43823 692 aaKnown RBP12.77□□□□□ -0.37
CCDC88B-201ENST00000301897 TYROBPO43914 113 aa12.77□□□□□ -0.37
CCDC88B-201ENST00000301897 NPIPB7O75200 414 aa12.77□□□□□ -0.37
CCDC88B-201ENST00000301897 UPK3AO75631 287 aa12.77□□□□□ -0.37
CCDC88B-201ENST00000301897 ADRA2AP08913 450 aa12.77□□□□□ -0.37
CCDC88B-201ENST00000301897 CREB1P16220 341 aa12.77□□□□□ -0.37
CCDC88B-201ENST00000301897 ABCE1P61221 599 aaKnown RBP12.77□□□□□ -0.37
CCDC88B-201ENST00000301897 ARF1P84077 181 aaKnown RBP12.77□□□□□ -0.37
CCDC88B-201ENST00000301897 IL1RL1Q01638 556 aa12.77□□□□□ -0.37
CCDC88B-201ENST00000301897 BNIP2Q12982 314 aa12.77□□□□□ -0.37
CCDC88B-201ENST00000301897 SLC9B1Q4ZJI4 515 aa12.77□□□□□ -0.37
CCDC88B-201ENST00000301897 RNF220Q5VTB9 566 aa12.77□□□□□ -0.37
CCDC88B-201ENST00000301897 RINLQ6ZS11 566 aa12.77□□□□□ -0.37
CCDC88B-201ENST00000301897 ZNF621Q6ZSS3 439 aa12.77□□□□□ -0.37
CCDC88B-201ENST00000301897 LINGO2Q7L985 606 aa12.77□□□□□ -0.37
CCDC88B-201ENST00000301897 GPR137CQ8N3F9 429 aa12.77□□□□□ -0.37
CCDC88B-201ENST00000301897 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.77□□□□□ -0.37
CCDC88B-201ENST00000301897 ZNF781Q8N8C0 355 aa12.77□□□□□ -0.37
CCDC88B-201ENST00000301897 OR52P1PQ8NH57 321 aa12.77□□□□□ -0.37
CCDC88B-201ENST00000301897 MS4A5Q9H3V2 200 aa12.77□□□□□ -0.37
CCDC88B-201ENST00000301897 RLIMQ9NVW2 624 aa12.77□□□□□ -0.37
CCDC88B-201ENST00000301897 THUMPD1Q9NXG2 353 aaKnown RBP12.77□□□□□ -0.37
CCDC88B-201ENST00000301897 GRIP1Q9Y3R0 1128 aa12.77□□□□□ -0.37
CCDC88B-201ENST00000301897 MEGF8Q7Z7M0 2845 aa12.76□□□□□ -0.37
CCDC88B-201ENST00000301897 SH3PXD2BA1X283 911 aa12.76□□□□□ -0.37
CCDC88B-201ENST00000301897 TMEM247A6NEH6 219 aa12.76□□□□□ -0.37
CCDC88B-201ENST00000301897 TMEM229AB2RXF0 380 aa12.76□□□□□ -0.37
CCDC88B-201ENST00000301897 ITM2AO43736 263 aa12.76□□□□□ -0.37
CCDC88B-201ENST00000301897 ZNF432O94892 652 aa12.76□□□□□ -0.37
CCDC88B-201ENST00000301897 TFP02787 698 aa12.76□□□□□ -0.37
CCDC88B-201ENST00000301897 GKN3PP0CG01 181 aa12.76□□□□□ -0.37
CCDC88B-201ENST00000301897 RPL14P50914 215 aaKnown RBP12.76□□□□□ -0.37
CCDC88B-201ENST00000301897 CRISP3P54108 245 aa12.76□□□□□ -0.37
CCDC88B-201ENST00000301897 CLDN17P56750 224 aa12.76□□□□□ -0.37
CCDC88B-201ENST00000301897 NPRL3Q12980 569 aa12.76□□□□□ -0.37
CCDC88B-201ENST00000301897 SNTB2Q13425 540 aaKnown RBP12.76□□□□□ -0.37
CCDC88B-201ENST00000301897 CCNIQ14094 377 aa12.76□□□□□ -0.37
CCDC88B-201ENST00000301897 OGFOD2Q6N063 350 aa12.76□□□□□ -0.37
CCDC88B-201ENST00000301897 C5orf46Q6UWT4 87 aa12.76□□□□□ -0.37
CCDC88B-201ENST00000301897 CDK20Q8IZL9 346 aa12.76□□□□□ -0.37
CCDC88B-201ENST00000301897 ZCCHC24Q8N2G6 241 aaKnown RBP12.76□□□□□ -0.37
CCDC88B-201ENST00000301897 PIK3C3Q8NEB9 887 aa12.76□□□□□ -0.37
CCDC88B-201ENST00000301897 SGMS2Q8NHU3 365 aa12.76□□□□□ -0.37
CCDC88B-201ENST00000301897 ZNF418Q8TF45 676 aaPredicted RBP12.76□□□□□ -0.37
CCDC88B-201ENST00000301897 SLC35B4Q969S0 331 aa12.76□□□□□ -0.37
CCDC88B-201ENST00000301897 OXGR1Q96P68 337 aa12.76□□□□□ -0.37
CCDC88B-201ENST00000301897 OR52E6Q96RD3 313 aa12.76□□□□□ -0.37
CCDC88B-201ENST00000301897 ZBTB18Q99592 522 aa12.76□□□□□ -0.37
CCDC88B-201ENST00000301897 METTL17Q9H7H0 456 aaPredicted RBP12.76□□□□□ -0.37
CCDC88B-201ENST00000301897 SEC61A2Q9H9S3 476 aa12.76□□□□□ -0.37
CCDC88B-201ENST00000301897 CRLF2Q9HC73 371 aa12.76□□□□□ -0.37
CCDC88B-201ENST00000301897 GPR35Q9HC97 309 aa12.76□□□□□ -0.37
CCDC88B-201ENST00000301897 DSPPQ9NZW4 1301 aa12.76□□□□□ -0.37
CCDC88B-201ENST00000301897 ZNF99A8MXY4 864 aaPredicted RBP12.75□□□□□ -0.37
CCDC88B-201ENST00000301897 M0R233 179 aa12.75□□□□□ -0.37
CCDC88B-201ENST00000301897 AIM2O14862 343 aa12.75□□□□□ -0.37
CCDC88B-201ENST00000301897 BIRC5O15392 142 aa12.75□□□□□ -0.37
CCDC88B-201ENST00000301897 OR2T1O43869 369 aa12.75□□□□□ -0.37
CCDC88B-201ENST00000301897 C1QCP02747 245 aa12.75□□□□□ -0.37
CCDC88B-201ENST00000301897 CELA3BP08861 270 aa12.75□□□□□ -0.37
CCDC88B-201ENST00000301897 PNMTP11086 282 aa12.75□□□□□ -0.37
CCDC88B-201ENST00000301897 NR4A1P22736 598 aa12.75□□□□□ -0.37
CCDC88B-201ENST00000301897 CAPZA2P47755 286 aa12.75□□□□□ -0.37
CCDC88B-201ENST00000301897 COMPP49747 757 aaPredicted RBP12.75□□□□□ -0.37
CCDC88B-201ENST00000301897 RPS23P62266 143 aaKnown RBP12.75□□□□□ -0.37
CCDC88B-201ENST00000301897 ACTG1P63261 375 aa12.75□□□□□ -0.37
CCDC88B-201ENST00000301897 C1DQ13901 141 aaKnown RBP12.75□□□□□ -0.37
CCDC88B-201ENST00000301897 TRIP10Q15642 601 aa12.75□□□□□ -0.37
CCDC88B-201ENST00000301897 CHI3L2Q15782 390 aa12.75□□□□□ -0.37
CCDC88B-201ENST00000301897 COX20Q5RI15 118 aa12.75□□□□□ -0.37
CCDC88B-201ENST00000301897 SHQ1Q6PI26 577 aaKnown RBP12.75□□□□□ -0.37
CCDC88B-201ENST00000301897 ZNF836Q6ZNA1 936 aa12.75□□□□□ -0.37
CCDC88B-201ENST00000301897 SNX32Q86XE0 403 aa12.75□□□□□ -0.37
CCDC88B-201ENST00000301897 VRK2Q86Y07 508 aa12.75□□□□□ -0.37
CCDC88B-201ENST00000301897 GLB1L3Q8NCI6 653 aaPredicted RBP12.75□□□□□ -0.37
CCDC88B-201ENST00000301897 SEMA6DQ8NFY4 1073 aa12.75□□□□□ -0.37
CCDC88B-201ENST00000301897 MRPL24Q96A35 216 aaKnown RBP12.75□□□□□ -0.37
CCDC88B-201ENST00000301897 TMEM186Q96B77 213 aa12.75□□□□□ -0.37
CCDC88B-201ENST00000301897 SLC25A36Q96CQ1 311 aa12.75□□□□□ -0.37
CCDC88B-201ENST00000301897 DENND2DQ9H6A0 471 aaPredicted RBP12.75□□□□□ -0.37
CCDC88B-201ENST00000301897 NOX3Q9HBY0 568 aa12.75□□□□□ -0.37
CCDC88B-201ENST00000301897 REV1Q9UBZ9 1251 aa12.75□□□□□ -0.37
CCDC88B-201ENST00000301897 ZNF443Q9Y2A4 671 aaPredicted RBP12.75□□□□□ -0.37
CCDC88B-201ENST00000301897 IFT52Q9Y366 437 aa12.75□□□□□ -0.37
CCDC88B-201ENST00000301897 LOC102725191A0A1B0GVB3 256 aa12.74□□□□□ -0.37
CCDC88B-201ENST00000301897 FTCDNL1E5RQL4 147 aa12.74□□□□□ -0.37
CCDC88B-201ENST00000301897 FZD7O75084 574 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms