RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 OR51Q1Q8NH59 317 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 WDR92Q96MX6 357 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 TRIM2Q9C040 744 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 FXYD6Q9H0Q3 95 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 NRIP3Q9NQ35 241 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 DLL4Q9NR61 685 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 DUSP22Q9NRW4 184 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 MYEF2Q9P2K5 600 aaKnown RBP11.61□□□□□ -0.55
LIG1-201ENST00000263274 KLF8O95600 359 aaPredicted RBP11.6□□□□□ -0.55
LIG1-201ENST00000263274 OR2T7P0C7T2 308 aa11.6□□□□□ -0.55
LIG1-201ENST00000263274 CCR9P51686 369 aa11.6□□□□□ -0.55
LIG1-201ENST00000263274 TMEM255AQ5JRV8 349 aa11.6□□□□□ -0.55
LIG1-201ENST00000263274 FAM109BQ6ICB4 259 aaPredicted RBP11.6□□□□□ -0.55
LIG1-201ENST00000263274 TMEM65Q6PI78 240 aa11.6□□□□□ -0.55
LIG1-201ENST00000263274 OR52B4Q8NGK2 314 aa11.6□□□□□ -0.55
LIG1-201ENST00000263274 OR6N2Q8NGY6 317 aa11.6□□□□□ -0.55
LIG1-201ENST00000263274 OR2T27Q8NH04 317 aa11.6□□□□□ -0.55
LIG1-201ENST00000263274 PHOSPHO1Q8TCT1 267 aa11.6□□□□□ -0.55
LIG1-201ENST00000263274 HRASLSQ9HDD0 168 aa11.6□□□□□ -0.55
LIG1-201ENST00000263274 MAB21L2Q9Y586 359 aa11.6□□□□□ -0.55
LIG1-201ENST00000263274 OR6C68A6NDL8 312 aa11.6□□□□□ -0.55
LIG1-201ENST00000263274 ELOA3DA6NLF2 546 aaPredicted RBP11.6□□□□□ -0.55
LIG1-201ENST00000263274 BRINP1O60477 761 aa11.6□□□□□ -0.55
LIG1-201ENST00000263274 DOK2O60496 412 aa11.6□□□□□ -0.55
LIG1-201ENST00000263274 ATP1B1P05026 303 aa11.6□□□□□ -0.55
LIG1-201ENST00000263274 GRK6P43250 576 aa11.6□□□□□ -0.55
LIG1-201ENST00000263274 MMP15P51511 669 aa11.6□□□□□ -0.55
LIG1-201ENST00000263274 ACTA2P62736 377 aa11.6□□□□□ -0.55
LIG1-201ENST00000263274 ACTG2P63267 376 aa11.6□□□□□ -0.55
LIG1-201ENST00000263274 ITPRIPL2Q3MIP1 535 aa11.6□□□□□ -0.55
LIG1-201ENST00000263274 ELOA3BQ3SY89 546 aa11.6□□□□□ -0.55
LIG1-201ENST00000263274 TMEM240Q5SV17 173 aa11.6□□□□□ -0.55
LIG1-201ENST00000263274 FCRL6Q6DN72 434 aa11.6□□□□□ -0.55
LIG1-201ENST00000263274 PARM1Q6UWI2 310 aa11.6□□□□□ -0.55
LIG1-201ENST00000263274 NLRC3Q7RTR2 1065 aa11.6□□□□□ -0.55
LIG1-201ENST00000263274 ELOA3Q8NG57 546 aa11.6□□□□□ -0.55
LIG1-201ENST00000263274 FBXW5Q969U6 566 aa11.6□□□□□ -0.55
LIG1-201ENST00000263274 ELF4Q99607 663 aaPredicted RBP11.6□□□□□ -0.55
LIG1-201ENST00000263274 TRAF4Q9BUZ4 470 aaPredicted RBP11.6□□□□□ -0.55
LIG1-201ENST00000263274 ZNF436Q9C0F3 470 aaPredicted RBP11.6□□□□□ -0.55
LIG1-201ENST00000263274 COPZ2Q9P299 210 aa11.6□□□□□ -0.55
LIG1-201ENST00000263274 KLHL9Q9P2J3 617 aa11.6□□□□□ -0.55
LIG1-201ENST00000263274 ST6GALNAC2Q9UJ37 374 aa11.6□□□□□ -0.55
LIG1-201ENST00000263274 C7orf66A4D0T2 115 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 OR5K3A6NET4 321 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 ARPC5O15511 151 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 HCRTR1O43613 425 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 ZNF254O75437 659 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 POU4F2Q12837 409 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 CAMK2DQ13557 499 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 RPL22L1Q6P5R6 122 aaKnown RBP11.59□□□□□ -0.55
LIG1-201ENST00000263274 OR4C3Q8NH37 302 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 MOSPD2Q8NHP6 518 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 LHFPL5Q8TAF8 219 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 V9GY05 133 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 CHD9Q3L8U1 2897 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 KIF26AQ9ULI4 1882 aaPredicted RBP11.59□□□□□ -0.55
LIG1-201ENST00000263274 A0A0B4J2E0 115 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 A0A1B0GX12 115 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 C11orf98E9PRG8 122 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 ITGA10O75578 1167 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 TPOP07202 933 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 ITPKBP27987 946 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 LSSP48449 732 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 CTXN1P60606 82 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 TMEM196Q5HYL7 178 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 ZNF613Q6PF04 617 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 ALKAL2Q6UX46 152 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 ZNF782Q6ZMW2 699 aaPredicted RBP11.59□□□□□ -0.55
LIG1-201ENST00000263274 PRSS58Q8IYP2 241 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 ZNF563Q8TA94 476 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 FGF14Q92915 247 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 C14orf105Q9NVL8 296 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 SCP2D1Q9UJQ7 156 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 DTX4Q9Y2E6 619 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 KIAA1549LQ6ZVL6 1849 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 PTP4A3O75365 173 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 ZFPL1O95159 310 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 MPC2O95563 127 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 GPANK1O95872 356 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 CTSEP14091 401 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 GALP22466 123 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 NTSR1P30989 418 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 KIR2DS3Q14952 304 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 PRICKLE4Q2TBC4 344 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 ULK3Q6PHR2 472 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 RCBTB1Q8NDN9 531 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 ZDHHC1Q8WTX9 485 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 WDR89Q96FK6 387 aaPredicted RBP11.59□□□□□ -0.55
LIG1-201ENST00000263274 MRPL48Q96GC5 212 aaKnown RBP11.59□□□□□ -0.55
LIG1-201ENST00000263274 ALG12Q9BV10 488 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 TCEAL2Q9H3H9 227 aaPredicted RBP11.59□□□□□ -0.55
LIG1-201ENST00000263274 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.59□□□□□ -0.55
LIG1-201ENST00000263274 RXFP3Q9NSD7 469 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 SCML1Q9UN30 329 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 ERVK-19Q9WJR5 959 aa11.59□□□□□ -0.55
LIG1-201ENST00000263274 SPI1P17947 270 aa11.58□□□□□ -0.56
LIG1-201ENST00000263274 BTG2P78543 158 aa11.58□□□□□ -0.56
LIG1-201ENST00000263274 GAS6Q14393 721 aa11.58□□□□□ -0.56
LIG1-201ENST00000263274 COL28A1Q2UY09 1125 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms