RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 C3AR1Q16581 482 aa11.02□□□□□ -0.65
LINC00339-213ENST00000642137 MS4A18Q3C1V0 323 aa11.02□□□□□ -0.65
LINC00339-213ENST00000642137 OTUD3Q5T2D3 398 aaPredicted RBP11.02□□□□□ -0.65
LINC00339-213ENST00000642137 KDM4DQ6B0I6 523 aa11.02□□□□□ -0.65
LINC00339-213ENST00000642137 GTF2IRD2BQ6EKJ0 949 aa11.02□□□□□ -0.65
LINC00339-213ENST00000642137 PPP4R4Q6NUP7 873 aa11.02□□□□□ -0.65
LINC00339-213ENST00000642137 ZNF585AQ6P3V2 769 aa11.02□□□□□ -0.65
LINC00339-213ENST00000642137 ZBTB49Q6ZSB9 765 aa11.02□□□□□ -0.65
LINC00339-213ENST00000642137 OAFQ86UD1 273 aa11.02□□□□□ -0.65
LINC00339-213ENST00000642137 GTF2IRD2Q86UP8 949 aa11.02□□□□□ -0.65
LINC00339-213ENST00000642137 EPHX4Q8IUS5 362 aa11.02□□□□□ -0.65
LINC00339-213ENST00000642137 SLC43A2Q8N370 569 aa11.02□□□□□ -0.65
LINC00339-213ENST00000642137 TMEM99Q8N816 258 aa11.02□□□□□ -0.65
LINC00339-213ENST00000642137 ATG16L2Q8NAA4 619 aa11.02□□□□□ -0.65
LINC00339-213ENST00000642137 OR5M9Q8NGP3 310 aa11.02□□□□□ -0.65
LINC00339-213ENST00000642137 EME1Q96AY2 570 aa11.02□□□□□ -0.65
LINC00339-213ENST00000642137 TNFRSF13CQ96RJ3 184 aa11.02□□□□□ -0.65
LINC00339-213ENST00000642137 CIB1Q99828 191 aa11.02□□□□□ -0.65
LINC00339-213ENST00000642137 NIPSNAP1Q9BPW8 284 aa11.02□□□□□ -0.65
LINC00339-213ENST00000642137 RBM4BQ9BQ04 359 aaKnown RBP11.02□□□□□ -0.65
LINC00339-213ENST00000642137 RBM4Q9BWF3 364 aaKnown RBP11.02□□□□□ -0.65
LINC00339-213ENST00000642137 UCK2Q9BZX2 261 aa11.02□□□□□ -0.65
LINC00339-213ENST00000642137 CHST11Q9NPF2 352 aa11.02□□□□□ -0.65
LINC00339-213ENST00000642137 FANCFQ9NPI8 374 aa11.02□□□□□ -0.65
LINC00339-213ENST00000642137 C8orf4Q9NR00 106 aa11.02□□□□□ -0.65
LINC00339-213ENST00000642137 TAS2R5Q9NYW4 299 aa11.02□□□□□ -0.65
LINC00339-213ENST00000642137 USE1Q9NZ43 259 aa11.02□□□□□ -0.65
LINC00339-213ENST00000642137 SIGLEC7Q9Y286 467 aa11.02□□□□□ -0.65
LINC00339-213ENST00000642137 HIF3AQ9Y2N7 669 aa11.02□□□□□ -0.65
LINC00339-213ENST00000642137 KIAA1549Q9HCM3 1950 aa11.02□□□□□ -0.65
LINC00339-213ENST00000642137 SVILO95425 2214 aa11.02□□□□□ -0.65
LINC00339-213ENST00000642137 ATMQ13315 3056 aa11.02□□□□□ -0.65
LINC00339-213ENST00000642137 CD8B2A6NJW9 211 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 AQP7P3A6NL99 342 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 BLOC1S5-TXNDC5H3BN57 136 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 M0R082 166 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 PDLIM1O00151 329 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 PLPP3O14495 311 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 CYTIPO60759 359 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 SLC19A2O60779 497 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 RCBTB2O95199 551 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 OR6A2O95222 327 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 POU2F1P14859 743 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 P2RY4P51582 365 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 ALDH3A2P51648 485 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 PRPS1P60891 318 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 PPP2R2BQ00005 443 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 FHL1Q13642 323 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 DAG1Q14118 895 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 PDK3Q15120 406 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 PON3Q15166 354 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 TAF11Q15544 211 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 TRIP10Q15642 601 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 OGFRL1Q5TC84 451 aaPredicted RBP11.01□□□□□ -0.65
LINC00339-213ENST00000642137 NSUN5P2Q63ZY6 315 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 TMEM225Q6GV28 225 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 RASSF6Q6ZTQ3 369 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 FCRLAQ7L513 359 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 CD163Q86VB7 1156 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 MEX3DQ86XN8 651 aaKnown RBP11.01□□□□□ -0.65
LINC00339-213ENST00000642137 DOLPP1Q86YN1 238 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 ZNF843Q8N446 348 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 OR51A7Q8NH64 312 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 ZNF417Q8TAU3 575 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 ROBO4Q8WZ75 1007 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 GTPBP3Q969Y2 492 aaKnown RBP11.01□□□□□ -0.65
LINC00339-213ENST00000642137 OXGR1Q96P68 337 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 ZNF587Q96SQ5 575 aaPredicted RBP11.01□□□□□ -0.65
LINC00339-213ENST00000642137 SLC29A1Q99808 456 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 SF3B5Q9BWJ5 86 aaKnown RBP11.01□□□□□ -0.65
LINC00339-213ENST00000642137 PRRG4Q9BZD6 226 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 RASSF4Q9H2L5 321 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 TP63Q9H3D4 680 aaPredicted RBP11.01□□□□□ -0.65
LINC00339-213ENST00000642137 SMURF2Q9HAU4 748 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 IL20Q9NYY1 176 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 CLCF1Q9UBD9 225 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 RASD1Q9Y272 281 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 POFUT2Q9Y2G5 429 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 TLN1Q9Y490 2541 aaKnown RBP11.01□□□□□ -0.65
LINC00339-213ENST00000642137 COL6A6A6NMZ7 2263 aa11.01□□□□□ -0.65
LINC00339-213ENST00000642137 SLC22A20A6NK97 555 aa11□□□□□ -0.65
LINC00339-213ENST00000642137 EIF4E1BA6NMX2 242 aaKnown RBP11□□□□□ -0.65
LINC00339-213ENST00000642137 SOCS2O14508 198 aa11□□□□□ -0.65
LINC00339-213ENST00000642137 SMAD9O15198 467 aaKnown RBP11□□□□□ -0.65
LINC00339-213ENST00000642137 HPRP00739 348 aa11□□□□□ -0.65
LINC00339-213ENST00000642137 PRB1P04280 392 aa11□□□□□ -0.65
LINC00339-213ENST00000642137 ADORA3P0DMS8 318 aa11□□□□□ -0.65
LINC00339-213ENST00000642137 OSMP13725 252 aa11□□□□□ -0.65
LINC00339-213ENST00000642137 ACVR2AP27037 513 aa11□□□□□ -0.65
LINC00339-213ENST00000642137 UQCRC1P31930 480 aa11□□□□□ -0.65
LINC00339-213ENST00000642137 RPS4XP62701 263 aaKnown RBP11□□□□□ -0.65
LINC00339-213ENST00000642137 RFX4Q33E94 735 aa11□□□□□ -0.65
LINC00339-213ENST00000642137 ACSF3Q4G176 576 aaPredicted RBP11□□□□□ -0.65
LINC00339-213ENST00000642137 C1orf185Q5T7R7 199 aa11□□□□□ -0.65
LINC00339-213ENST00000642137 LPCAT4Q643R3 524 aa11□□□□□ -0.65
LINC00339-213ENST00000642137 ANKRD34AQ69YU3 496 aa11□□□□□ -0.65
LINC00339-213ENST00000642137 RTL6Q6ICC9 239 aa11□□□□□ -0.65
LINC00339-213ENST00000642137 RPL13AP3Q6NVV1 102 aa11□□□□□ -0.65
LINC00339-213ENST00000642137 KLHL17Q6TDP4 642 aa11□□□□□ -0.65
LINC00339-213ENST00000642137 NANOGNBQ7Z5D8 188 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms