RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 MRPS12O15235 138 aaKnown RBP0.15□□□□□ -2.39
VPS35-212ENST00000640313 RS1O15537 224 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 B4GALT5O43286 388 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 PRKAB2O43741 272 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 OR1F1O43749 312 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 CXCL13O43927 109 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 SSX5O60225 188 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 VPS26AO75436 327 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 MED6O75586 246 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 GCM2O75603 506 aaPredicted RBP0.15□□□□□ -2.39
VPS35-212ENST00000640313 RP2O75695 350 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 RBBP9O75884 186 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 CCNKO75909 580 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 TM7SF2O76062 418 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 CTDNEP1O95476 244 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 SLC25A27O95847 323 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 MBD3O95983 291 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 MT-ATP6P00846 226 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 BGLAPP02818 100 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 MT-ND3P03897 115 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 OPN1MWP04001 364 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 RHOXF2BP0C7M4 288 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 RBMY1DP0C7P1 496 aaKnown RBP0.15□□□□□ -2.39
VPS35-212ENST00000640313 P0C880 135 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 RBMY1A1P0DJD3 496 aaKnown RBP0.15□□□□□ -2.39
VPS35-212ENST00000640313 OPN1MW2P0DN77 364 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 OPN1MW3P0DN78 364 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 IGHV1-8P0DP01 117 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 IGKV1-13P0DP09 117 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 PNMTP11086 282 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 PSMC3P17980 439 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 POLR2EP19388 210 aaKnown RBP0.15□□□□□ -2.39
VPS35-212ENST00000640313 HLA-DPA1P20036 260 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 COX5AP20674 150 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 ATP6V1B2P21281 511 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 IL10P22301 178 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 CD34P28906 385 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 YWHABP31946 246 aaKnown RBP0.15□□□□□ -2.39
VPS35-212ENST00000640313 DDOSTP39656 456 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 OPRD1P41143 372 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 KIR3DL2P43630 455 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 QARSP47897 775 aaKnown RBP0.15□□□□□ -2.39
VPS35-212ENST00000640313 CASP4P49662 377 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 DAP3P51398 398 aaKnown RBP0.15□□□□□ -2.39
VPS35-212ENST00000640313 CRYBB1P53674 252 aaPredicted RBP0.15□□□□□ -2.39
VPS35-212ENST00000640313 AP3M2P53677 418 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 PLA2G16P53816 162 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 OSTNP61366 133 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 SELENOTP62341 195 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 ACTA2P62736 377 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 ACTC1P68032 377 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 TNFRSF17Q02223 184 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 CNTN2Q02246 1040 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 ACVR1Q04771 509 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 SLC10A7Q0GE19 358 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 ZNF816Q0VGE8 651 aaPredicted RBP0.15□□□□□ -2.39
VPS35-212ENST00000640313 PJVKQ0ZLH3 352 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 CDC20Q12834 499 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 KLRB1Q12918 225 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 PPP2R5CQ13362 524 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 ARFRP1Q13795 201 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 FZD2Q14332 565 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 MXD4Q14582 209 aaPredicted RBP0.15□□□□□ -2.39
VPS35-212ENST00000640313 GANABQ14697 944 aaKnown RBP0.15□□□□□ -2.39
VPS35-212ENST00000640313 ARL6IP1Q15041 203 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 SLC15A2Q16348 729 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 CARTPTQ16568 116 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 PRSS8Q16651 343 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 MAPK6Q16659 721 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 PARP15Q460N3 678 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 CCDC40Q4G0X9 1142 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 TP53I3Q53FA7 332 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 TMEM41BQ5BJD5 291 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 ZNF311Q5JNZ3 666 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 RAET1LQ5VY80 246 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 TPGS2Q68CL5 300 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 OR52E8Q6IFG1 317 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 FRMPD2BQ6IN97 320 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 SCYL2Q6P3W7 929 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 LRRC8BQ6P9F7 803 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 SLC25A34Q6PIV7 304 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 CCDC137Q6PK04 289 aaKnown RBP0.15□□□□□ -2.39
VPS35-212ENST00000640313 LRRC31Q6UY01 552 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 BRD3OSQ6XYD6 125 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 SYT10Q6XYQ8 523 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 ZNF620Q6ZNG0 422 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 C19orf35Q6ZS72 473 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 RBM43Q6ZSC3 357 aaKnown RBP0.15□□□□□ -2.39
VPS35-212ENST00000640313 SHISA6Q6ZSJ9 500 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 FAM92BQ6ZTR7 304 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 CENPUQ71F23 418 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 GET4Q7L5D6 327 aaPredicted RBP0.15□□□□□ -2.39
VPS35-212ENST00000640313 NLRP9Q7RTR0 991 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 LRRC70Q7Z2Q7 622 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 MIER3Q7Z3K6 550 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 CCDC91Q7Z6B0 441 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 KIAA1328Q86T90 577 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 MOB3BQ86TA1 216 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 TMEM110Q86TL2 294 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 ZNF546Q86UE3 836 aa0.15□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms