RNA–Protein interactions for RNA: ENST00000637325.1

PNKP-228, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 100 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-228ENST00000637325 SH3GL1Q99961 368 aa12.16□□□□□ -0.46
PNKP-228ENST00000637325 RSPO3Q9BXY4 272 aaPredicted RBP12.16□□□□□ -0.46
PNKP-228ENST00000637325 SLCO5A1Q9H2Y9 848 aa12.16□□□□□ -0.46
PNKP-228ENST00000637325 CXorf56Q9H5V9 222 aa12.16□□□□□ -0.46
PNKP-228ENST00000637325 KAT8Q9H7Z6 458 aaKnown RBP12.16□□□□□ -0.46
PNKP-228ENST00000637325 MED4Q9NPJ6 270 aa12.16□□□□□ -0.46
PNKP-228ENST00000637325 SLC7A10Q9NS82 523 aa12.16□□□□□ -0.46
PNKP-228ENST00000637325 A0A1W2PR80 420 aa12.15□□□□□ -0.46
PNKP-228ENST00000637325 M0QX08 132 aa12.15□□□□□ -0.46
PNKP-228ENST00000637325 FBP2O00757 339 aa12.15□□□□□ -0.46
PNKP-228ENST00000637325 AIM2O14862 343 aa12.15□□□□□ -0.46
PNKP-228ENST00000637325 OPN1SWP03999 348 aa12.15□□□□□ -0.46
PNKP-228ENST00000637325 ITGA5P08648 1049 aa12.15□□□□□ -0.46
PNKP-228ENST00000637325 ZNF43P17038 809 aa12.15□□□□□ -0.46
PNKP-228ENST00000637325 MPGP29372 298 aa12.15□□□□□ -0.46
PNKP-228ENST00000637325 PCGF2P35227 344 aa12.15□□□□□ -0.46
PNKP-228ENST00000637325 ZNF83P51522 516 aa12.15□□□□□ -0.46
PNKP-228ENST00000637325 FOXG1P55316 489 aaPredicted RBP12.15□□□□□ -0.46
PNKP-228ENST00000637325 PCBP3P57721 371 aaKnown RBP12.15□□□□□ -0.46
PNKP-228ENST00000637325 EGR4Q05215 589 aa12.15□□□□□ -0.46
PNKP-228ENST00000637325 KLF10Q13118 480 aa12.15□□□□□ -0.46
PNKP-228ENST00000637325 GABRA6Q16445 453 aa12.15□□□□□ -0.46
PNKP-228ENST00000637325 INTS11Q5TA45 600 aaKnown RBP12.15□□□□□ -0.46
PNKP-228ENST00000637325 ADAM5Q6NVV9 412 aa12.15□□□□□ -0.46
PNKP-228ENST00000637325 CREB3L2Q70SY1 520 aa12.15□□□□□ -0.46
PNKP-228ENST00000637325 NET1Q7Z628 596 aaPredicted RBP12.15□□□□□ -0.46
PNKP-228ENST00000637325 PATL1Q86TB9 770 aaKnown RBP12.15□□□□□ -0.46
PNKP-228ENST00000637325 FBXW5Q969U6 566 aa12.15□□□□□ -0.46
PNKP-228ENST00000637325 LRRC58Q96CX6 371 aa12.15□□□□□ -0.46
PNKP-228ENST00000637325 MUS81Q96NY9 551 aa12.15□□□□□ -0.46
PNKP-228ENST00000637325 EPYCQ99645 322 aa12.15□□□□□ -0.46
PNKP-228ENST00000637325 MCHR1Q99705 422 aa12.15□□□□□ -0.46
PNKP-228ENST00000637325 ECSITQ9BQ95 431 aa12.15□□□□□ -0.46
PNKP-228ENST00000637325 PTDSS2Q9BVG9 487 aa12.15□□□□□ -0.46
PNKP-228ENST00000637325 SAR1AQ9NR31 198 aa12.15□□□□□ -0.46
PNKP-228ENST00000637325 LAMP3Q9UQV4 416 aa12.15□□□□□ -0.46
PNKP-228ENST00000637325 TRAV36DV7A0A075B6V5 113 aa12.14□□□□□ -0.47
PNKP-228ENST00000637325 OR6C65A6NJZ3 312 aa12.14□□□□□ -0.47
PNKP-228ENST00000637325 BBIP1A8MTZ0 92 aa12.14□□□□□ -0.47
PNKP-228ENST00000637325 FTCDNL1E5RQL4 147 aa12.14□□□□□ -0.47
PNKP-228ENST00000637325 M0R3H8 397 aa12.14□□□□□ -0.47
PNKP-228ENST00000637325 MRASO14807 208 aa12.14□□□□□ -0.47
PNKP-228ENST00000637325 TMCC2O75069 709 aa12.14□□□□□ -0.47
PNKP-228ENST00000637325 LGI1O95970 557 aa12.14□□□□□ -0.47
PNKP-228ENST00000637325 FOSL1P15407 271 aa12.14□□□□□ -0.47
PNKP-228ENST00000637325 CDH2P19022 906 aaPredicted RBP12.14□□□□□ -0.47
PNKP-228ENST00000637325 CBLP22681 906 aa12.14□□□□□ -0.47
PNKP-228ENST00000637325 P2RY4P51582 365 aa12.14□□□□□ -0.47
PNKP-228ENST00000637325 RPS4XP62701 263 aaKnown RBP12.14□□□□□ -0.47
PNKP-228ENST00000637325 C1DQ13901 141 aaKnown RBP12.14□□□□□ -0.47
PNKP-228ENST00000637325 ZNF672Q499Z4 452 aaPredicted RBP12.14□□□□□ -0.47
PNKP-228ENST00000637325 FAM69AQ5T7M9 428 aa12.14□□□□□ -0.47
PNKP-228ENST00000637325 NANOGP8Q6NSW7 305 aa12.14□□□□□ -0.47
PNKP-228ENST00000637325 CGB2Q6NT52 195 aa12.14□□□□□ -0.47
PNKP-228ENST00000637325 NIPAL3Q6P499 406 aa12.14□□□□□ -0.47
PNKP-228ENST00000637325 KLHL24Q6TFL4 600 aa12.14□□□□□ -0.47
PNKP-228ENST00000637325 TMEM108Q6UXF1 575 aa12.14□□□□□ -0.47
PNKP-228ENST00000637325 YTHDF3Q7Z739 585 aaKnown RBP12.14□□□□□ -0.47
PNKP-228ENST00000637325 EPHX4Q8IUS5 362 aa12.14□□□□□ -0.47
PNKP-228ENST00000637325 PIAS4Q8N2W9 510 aaPredicted RBP12.14□□□□□ -0.47
PNKP-228ENST00000637325 KDM8Q8N371 416 aa12.14□□□□□ -0.47
PNKP-228ENST00000637325 C10orf53Q8N6V4 93 aa12.14□□□□□ -0.47
PNKP-228ENST00000637325 ZIC4Q8N9L1 334 aa12.14□□□□□ -0.47
PNKP-228ENST00000637325 PCYOX1LQ8NBM8 494 aa12.14□□□□□ -0.47
PNKP-228ENST00000637325 C1orf162Q8NEQ5 155 aaPredicted RBP12.14□□□□□ -0.47
PNKP-228ENST00000637325 KBTBD8Q8NFY9 601 aa12.14□□□□□ -0.47
PNKP-228ENST00000637325 NEUROG1Q92886 237 aa12.14□□□□□ -0.47
PNKP-228ENST00000637325 TAAR8Q969N4 342 aa12.14□□□□□ -0.47
PNKP-228ENST00000637325 OXGR1Q96P68 337 aa12.14□□□□□ -0.47
PNKP-228ENST00000637325 NANOGQ9H9S0 305 aa12.14□□□□□ -0.47
PNKP-228ENST00000637325 GID8Q9NWU2 228 aa12.14□□□□□ -0.47
PNKP-228ENST00000637325 KLHL14Q9P2G3 628 aa12.14□□□□□ -0.47
PNKP-228ENST00000637325 SLC25A15Q9Y619 301 aa12.14□□□□□ -0.47
PNKP-228ENST00000637325 A0A087WUJ7 227 aa12.13□□□□□ -0.47
PNKP-228ENST00000637325 A0A0B4J2E0 115 aa12.13□□□□□ -0.47
PNKP-228ENST00000637325 LOC100653049A0A140TA62 436 aa12.13□□□□□ -0.47
PNKP-228ENST00000637325 A0A1B0GX12 115 aa12.13□□□□□ -0.47
PNKP-228ENST00000637325 ZNF587BE7ETH6 402 aa12.13□□□□□ -0.47
PNKP-228ENST00000637325 M0R082 166 aa12.13□□□□□ -0.47
PNKP-228ENST00000637325 M0R1B8 84 aa12.13□□□□□ -0.47
PNKP-228ENST00000637325 PDLIM1O00151 329 aa12.13□□□□□ -0.47
PNKP-228ENST00000637325 ABCD4O14678 606 aa12.13□□□□□ -0.47
PNKP-228ENST00000637325 KRT34O76011 436 aa12.13□□□□□ -0.47
PNKP-228ENST00000637325 NPPAP01160 153 aa12.13□□□□□ -0.47
PNKP-228ENST00000637325 C8BP07358 591 aa12.13□□□□□ -0.47
PNKP-228ENST00000637325 NQO1P15559 274 aaKnown RBP12.13□□□□□ -0.47
PNKP-228ENST00000637325 GRPRP30550 384 aa12.13□□□□□ -0.47
PNKP-228ENST00000637325 MDH1P40925 334 aaKnown RBP12.13□□□□□ -0.47
PNKP-228ENST00000637325 PTH2RP49190 550 aa12.13□□□□□ -0.47
PNKP-228ENST00000637325 SELENOPP49908 381 aa12.13□□□□□ -0.47
PNKP-228ENST00000637325 CDH11P55287 796 aa12.13□□□□□ -0.47
PNKP-228ENST00000637325 CDH12P55289 794 aa12.13□□□□□ -0.47
PNKP-228ENST00000637325 CLDN17P56750 224 aa12.13□□□□□ -0.47
PNKP-228ENST00000637325 RIPPLY3P57055 190 aa12.13□□□□□ -0.47
PNKP-228ENST00000637325 MFSD13AQ14CX5 517 aa12.13□□□□□ -0.47
PNKP-228ENST00000637325 DUSP7Q16829 419 aa12.13□□□□□ -0.47
PNKP-228ENST00000637325 VMACQ2NL98 169 aa12.13□□□□□ -0.47
PNKP-228ENST00000637325 COQ5Q5HYK3 327 aa12.13□□□□□ -0.47
PNKP-228ENST00000637325 REP15Q6BDI9 236 aa12.13□□□□□ -0.47
PNKP-228ENST00000637325 PRSS57Q6UWY2 283 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms