RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 KHKP50053 298 aa12.68□□□□□ -0.38
PNKP-218ENST00000625299 ROR2Q01974 943 aaKnown RBP12.68□□□□□ -0.38
PNKP-218ENST00000625299 C3orf36Q3SXR2 165 aa12.68□□□□□ -0.38
PNKP-218ENST00000625299 FAHD2BQ6P2I3 314 aaPredicted RBP12.68□□□□□ -0.38
PNKP-218ENST00000625299 ZCCHC23Q6ZST2 131 aa12.68□□□□□ -0.38
PNKP-218ENST00000625299 CARM1Q86X55 608 aa12.68□□□□□ -0.38
PNKP-218ENST00000625299 CNPY4Q8N129 248 aa12.68□□□□□ -0.38
PNKP-218ENST00000625299 MIPOL1Q8TD10 442 aa12.68□□□□□ -0.38
PNKP-218ENST00000625299 FAHD2AQ96GK7 314 aa12.68□□□□□ -0.38
PNKP-218ENST00000625299 MECRQ9BV79 373 aa12.68□□□□□ -0.38
PNKP-218ENST00000625299 RBM4Q9BWF3 364 aaKnown RBP12.68□□□□□ -0.38
PNKP-218ENST00000625299 NELFAQ9H3P2 528 aa12.68□□□□□ -0.38
PNKP-218ENST00000625299 CRLF2Q9HC73 371 aa12.68□□□□□ -0.38
PNKP-218ENST00000625299 IGHV2OR16-5A0A0B4J2B6 119 aa12.67□□□□□ -0.38
PNKP-218ENST00000625299 CFAP73A6NFT4 308 aa12.67□□□□□ -0.38
PNKP-218ENST00000625299 NPHS1O60500 1241 aa12.67□□□□□ -0.38
PNKP-218ENST00000625299 IGKV3-15P01624 115 aa12.67□□□□□ -0.38
PNKP-218ENST00000625299 EPHA1P21709 976 aa12.67□□□□□ -0.38
PNKP-218ENST00000625299 UQCRC2P22695 453 aa12.67□□□□□ -0.38
PNKP-218ENST00000625299 ALDH3A1P30838 453 aa12.67□□□□□ -0.38
PNKP-218ENST00000625299 CHI3L1P36222 383 aaPredicted RBP12.67□□□□□ -0.38
PNKP-218ENST00000625299 HILS1P60008 231 aa12.67□□□□□ -0.38
PNKP-218ENST00000625299 BNIP2Q12982 314 aa12.67□□□□□ -0.38
PNKP-218ENST00000625299 DAG1Q14118 895 aa12.67□□□□□ -0.38
PNKP-218ENST00000625299 PRAMEF8Q5VWM4 474 aa12.67□□□□□ -0.38
PNKP-218ENST00000625299 PRAMEF7Q5VXH5 474 aa12.67□□□□□ -0.38
PNKP-218ENST00000625299 CREB3L2Q70SY1 520 aa12.67□□□□□ -0.38
PNKP-218ENST00000625299 HOMEZQ8IX15 550 aa12.67□□□□□ -0.38
PNKP-218ENST00000625299 MNS1Q8NEH6 495 aa12.67□□□□□ -0.38
PNKP-218ENST00000625299 OR51F2Q8NH61 342 aa12.67□□□□□ -0.38
PNKP-218ENST00000625299 MAGEE2Q8TD90 523 aaPredicted RBP12.67□□□□□ -0.38
PNKP-218ENST00000625299 C16orf45Q96MC5 204 aaPredicted RBP12.67□□□□□ -0.38
PNKP-218ENST00000625299 ZNF317Q96PQ6 595 aaPredicted RBP12.67□□□□□ -0.38
PNKP-218ENST00000625299 NOX3Q9HBY0 568 aa12.67□□□□□ -0.38
PNKP-218ENST00000625299 MOV10Q9HCE1 1003 aaKnown RBP12.67□□□□□ -0.38
PNKP-218ENST00000625299 TREM2Q9NZC2 230 aa12.67□□□□□ -0.38
PNKP-218ENST00000625299 USP22Q9UPT9 525 aa12.67□□□□□ -0.38
PNKP-218ENST00000625299 CMAHPQ9Y471 501 aa12.67□□□□□ -0.38
PNKP-218ENST00000625299 PRAMEF27A3QJZ7 478 aa12.66□□□□□ -0.38
PNKP-218ENST00000625299 RNASET2O00584 256 aaKnown RBP12.66□□□□□ -0.38
PNKP-218ENST00000625299 SEC14L2O76054 403 aa12.66□□□□□ -0.38
PNKP-218ENST00000625299 SHBGP04278 402 aa12.66□□□□□ -0.38
PNKP-218ENST00000625299 CHRM4P08173 479 aa12.66□□□□□ -0.38
PNKP-218ENST00000625299 GUSBP08236 651 aa12.66□□□□□ -0.38
PNKP-218ENST00000625299 CBR1P16152 277 aa12.66□□□□□ -0.38
PNKP-218ENST00000625299 MAP2K6P52564 334 aa12.66□□□□□ -0.38
PNKP-218ENST00000625299 SH3BGRP55822 239 aaPredicted RBP12.66□□□□□ -0.38
PNKP-218ENST00000625299 CLDN8P56748 225 aa12.66□□□□□ -0.38
PNKP-218ENST00000625299 ARF1P84077 181 aaKnown RBP12.66□□□□□ -0.38
PNKP-218ENST00000625299 EPS8Q12929 822 aa12.66□□□□□ -0.38
PNKP-218ENST00000625299 ELFN2Q5R3F8 820 aa12.66□□□□□ -0.38
PNKP-218ENST00000625299 MDP1Q86V88 176 aa12.66□□□□□ -0.38
PNKP-218ENST00000625299 EPHX4Q8IUS5 362 aa12.66□□□□□ -0.38
PNKP-218ENST00000625299 IFT20Q8IY31 132 aa12.66□□□□□ -0.38
PNKP-218ENST00000625299 GSPT2Q8IYD1 628 aaKnown RBP12.66□□□□□ -0.38
PNKP-218ENST00000625299 CADM2Q8N3J6 435 aa12.66□□□□□ -0.38
PNKP-218ENST00000625299 ANKFN1Q8N957 763 aa12.66□□□□□ -0.38
PNKP-218ENST00000625299 PPP1R36Q96LQ0 422 aa12.66□□□□□ -0.38
PNKP-218ENST00000625299 JMJD8Q96S16 334 aa12.66□□□□□ -0.38
PNKP-218ENST00000625299 PIF1Q9H611 641 aa12.66□□□□□ -0.38
PNKP-218ENST00000625299 REV1Q9UBZ9 1251 aa12.66□□□□□ -0.38
PNKP-218ENST00000625299 MARCOQ9UEW3 520 aaPredicted RBP12.66□□□□□ -0.38
PNKP-218ENST00000625299 LOC105371242A0A075B767 164 aa12.65□□□□□ -0.38
PNKP-218ENST00000625299 ZNF503-AS2A6NEH8 195 aa12.65□□□□□ -0.38
PNKP-218ENST00000625299 M0R233 179 aa12.65□□□□□ -0.38
PNKP-218ENST00000625299 WNT9BO14905 357 aa12.65□□□□□ -0.38
PNKP-218ENST00000625299 FRS3O43559 492 aa12.65□□□□□ -0.38
PNKP-218ENST00000625299 HPXP02790 462 aa12.65□□□□□ -0.38
PNKP-218ENST00000625299 GKN3PP0CG01 181 aa12.65□□□□□ -0.38
PNKP-218ENST00000625299 GAAP10253 952 aa12.65□□□□□ -0.38
PNKP-218ENST00000625299 IL7RP16871 459 aa12.65□□□□□ -0.38
PNKP-218ENST00000625299 ARR3P36575 388 aa12.65□□□□□ -0.38
PNKP-218ENST00000625299 P2RY4P51582 365 aa12.65□□□□□ -0.38
PNKP-218ENST00000625299 MAD2L1Q13257 205 aaPredicted RBP12.65□□□□□ -0.38
PNKP-218ENST00000625299 GNA13Q14344 377 aa12.65□□□□□ -0.38
PNKP-218ENST00000625299 SYPL1Q16563 259 aa12.65□□□□□ -0.38
PNKP-218ENST00000625299 AWAT1Q58HT5 328 aa12.65□□□□□ -0.38
PNKP-218ENST00000625299 ZNF311Q5JNZ3 666 aa12.65□□□□□ -0.38
PNKP-218ENST00000625299 MRPL2Q5T653 305 aaKnown RBP12.65□□□□□ -0.38
PNKP-218ENST00000625299 AP1ARQ63HQ0 302 aa12.65□□□□□ -0.38
PNKP-218ENST00000625299 SAXO2Q658L1 398 aa12.65□□□□□ -0.38
PNKP-218ENST00000625299 CMIPQ8IY22 773 aa12.65□□□□□ -0.38
PNKP-218ENST00000625299 KDM8Q8N371 416 aa12.65□□□□□ -0.38
PNKP-218ENST00000625299 FAM169BQ8N8A8 192 aa12.65□□□□□ -0.38
PNKP-218ENST00000625299 EPS8L3Q8TE67 593 aaKnown RBP12.65□□□□□ -0.38
PNKP-218ENST00000625299 SYT3Q9BQG1 590 aa12.65□□□□□ -0.38
PNKP-218ENST00000625299 SLC35A5Q9BS91 424 aa12.65□□□□□ -0.38
PNKP-218ENST00000625299 MRPL37Q9BZE1 423 aaKnown RBP12.65□□□□□ -0.38
PNKP-218ENST00000625299 DPY30Q9C005 99 aa12.65□□□□□ -0.38
PNKP-218ENST00000625299 NOP53Q9NZM5 478 aaKnown RBP12.65□□□□□ -0.38
PNKP-218ENST00000625299 ZDHHC2Q9UIJ5 367 aa12.65□□□□□ -0.38
PNKP-218ENST00000625299 PCDHGB1Q9Y5G3 927 aa12.65□□□□□ -0.38
PNKP-218ENST00000625299 PKD1L1Q8TDX9 2849 aa12.65□□□□□ -0.38
PNKP-218ENST00000625299 TGP01266 2768 aa12.64□□□□□ -0.39
PNKP-218ENST00000625299 AGAP5A6NIR3 686 aa12.64□□□□□ -0.39
PNKP-218ENST00000625299 HMGN4O00479 90 aa12.64□□□□□ -0.39
PNKP-218ENST00000625299 FAAHO00519 579 aa12.64□□□□□ -0.39
PNKP-218ENST00000625299 PPIHO43447 177 aaKnown RBP12.64□□□□□ -0.39
PNKP-218ENST00000625299 SYNGR3O43761 229 aa12.64□□□□□ -0.39
PNKP-218ENST00000625299 VAMP5O95183 116 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms