RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 FAM25AB3EWG3 89 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 FAM25CB3EWG5 89 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 FAM25GB3EWG6 89 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 C11orf98E9PRG8 122 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 DYRK3O43781 588 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 PLGP00747 810 aaPredicted RBP9.68□□□□□ -0.86
CUX1-221ENST00000622516 SPI1P17947 270 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 EPHA4P54764 986 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 CTXN1P60606 82 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 SLC25A35Q3KQZ1 300 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 GUSBP11Q6P575 273 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.68□□□□□ -0.86
CUX1-221ENST00000622516 ATG4DQ86TL0 474 aaPredicted RBP9.68□□□□□ -0.86
CUX1-221ENST00000622516 OR7G1Q8NGA0 311 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 SUN5Q8TC36 379 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 ZNF501Q96CX3 271 aaPredicted RBP9.68□□□□□ -0.86
CUX1-221ENST00000622516 NDEL1Q9GZM8 345 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 C11orf54Q9H0W9 315 aaPredicted RBP9.68□□□□□ -0.86
CUX1-221ENST00000622516 SIAEQ9HAT2 523 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 B3GAT2Q9NPZ5 323 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 NRIP3Q9NQ35 241 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 SLC22A11Q9NSA0 550 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 ICAM5Q9UMF0 924 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 TRAPPC4Q9Y296 219 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 TCRBV16S1A1N1A0A5B0 115 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 TVP23AA6NH52 213 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 CDC40O60508 579 aaKnown RBP eCLIP9.68□□□□□ -0.86
CUX1-221ENST00000622516 PLCXD2Q0VAA5 305 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 ELAVL1Q15717 326 aaKnown RBP9.68□□□□□ -0.86
CUX1-221ENST00000622516 ZNF74Q16587 644 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 ACSM3Q53FZ2 586 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 DPY19L2P2Q6ZN68 376 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 CMIPQ8IY22 773 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 Q8N402 240 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 IL17RDQ8NFM7 739 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 TAAR8Q969N4 342 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 PMEPA1Q969W9 287 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 PELI1Q96FA3 418 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 PGLYRP3Q96LB9 341 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 RAB33BQ9H082 229 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 RBMX2Q9Y388 322 aaKnown RBP9.68□□□□□ -0.86
CUX1-221ENST00000622516 GPR179Q6PRD1 2367 aa9.68□□□□□ -0.86
CUX1-221ENST00000622516 A0A1B0GX78 115 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 FAM25EA8MYX2 175 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 PRR32B1ATL7 298 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 ZNF354AO60765 605 aaPredicted RBP9.67□□□□□ -0.86
CUX1-221ENST00000622516 CPNE3O75131 537 aaKnown RBP9.67□□□□□ -0.86
CUX1-221ENST00000622516 RPP14O95059 124 aaKnown RBP9.67□□□□□ -0.86
CUX1-221ENST00000622516 ELK1P19419 428 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 ABCD3P28288 659 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.67□□□□□ -0.861e-6■■■■■ 31.5
CUX1-221ENST00000622516 ALG10Q5BKT4 473 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 XKRXQ6PP77 449 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 SLC35F2Q8IXU6 374 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 SLC41A2Q96JW4 573 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 OR1F2PQ96R84 312 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 CNN2Q99439 309 aaKnown RBP9.67□□□□□ -0.86
CUX1-221ENST00000622516 LPAR4Q99677 370 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 JAM3Q9BX67 310 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 MMP25Q9NPA2 562 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 ING1Q9UK53 422 aaPredicted RBP9.67□□□□□ -0.86
CUX1-221ENST00000622516 RASD1Q9Y272 281 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 ANKRD61A6NGH8 418 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 PLPP2O43688 288 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 FOSL2P15408 326 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 TCEA1P23193 301 aaKnown RBP9.67□□□□□ -0.86
CUX1-221ENST00000622516 AHCYP23526 432 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 OR2B6P58173 313 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 SCN1BQ07699 218 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 FAM209AQ5JX71 171 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 WDR45BQ5MNZ6 344 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 AKAP14Q86UN6 197 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 FAM71CQ8NEG0 241 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 HSD17B8Q92506 261 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 TMCO6Q96DC7 493 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 OMA1Q96E52 524 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 OR6C1Q96RD1 312 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 NPAS1Q99742 590 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 TBL1XR1Q9BZK7 514 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 WWTR1Q9GZV5 400 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 KCNN2Q9H2S1 579 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 BAIAP2Q9UQB8 552 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 MMACHCQ9Y4U1 282 aa9.67□□□□□ -0.86
CUX1-221ENST00000622516 A0A0G2JMP0 313 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 A0A0X1KG70 313 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 FRG2CA6NGY1 282 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 PLA2G10O15496 165 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 PPM1BO75688 479 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 SDHBP21912 280 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 ARRB1P49407 418 aaPredicted RBP9.66□□□□□ -0.86
CUX1-221ENST00000622516 RPL18Q07020 188 aaKnown RBP9.66□□□□□ -0.86
CUX1-221ENST00000622516 ODF4Q2M2E3 257 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 RNASE12Q5GAN4 147 aaKnown RBP9.66□□□□□ -0.86
CUX1-221ENST00000622516 KDM8Q8N371 416 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 SAMD12Q8N8I0 201 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 OR4M2Q8NGB6 313 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 STT3BQ8TCJ2 826 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 DUSP19Q8WTR2 217 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 THAP4Q8WY91 577 aa9.66□□□□□ -0.86
CUX1-221ENST00000622516 OR14A2Q96R54 314 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms