RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 ASB17Q8WXJ9 295 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 FOXRED1Q96CU9 486 aaPredicted RBP12.98□□□□□ -0.33
CPSF1-212ENST00000616140 TCTN2Q96GX1 697 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 Q96M85 177 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 PDCD1LG2Q9BQ51 273 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 AHCTF1Q8WYP5 2266 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 SERPINE2P07093 398 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 DBHP09172 617 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 ZNF28P17035 718 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 TGFBR1P36897 503 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 MRPS21P82921 87 aaKnown RBP12.98□□□□□ -0.33
CPSF1-212ENST00000616140 OXA1LQ15070 435 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 AKR1C8PQ5T2L2 129 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 MED25Q71SY5 747 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 MRPL21Q7Z2W9 205 aaKnown RBP12.98□□□□□ -0.33
CPSF1-212ENST00000616140 TMEM179BQ7Z7N9 219 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 CMTM1Q8IZ96 169 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 OR6V1Q8N148 313 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 SENP5Q96HI0 755 aaPredicted RBP12.98□□□□□ -0.33
CPSF1-212ENST00000616140 SPIN2AQ99865 258 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 SPIN2BQ9BPZ2 258 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 SLC6A17Q9H1V8 727 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 CD207Q9UJ71 328 aa12.98□□□□□ -0.33
CPSF1-212ENST00000616140 DDX60LQ5H9U9 1706 aaKnown RBP12.97□□□□□ -0.33
CPSF1-212ENST00000616140 ZFAND5O76080 213 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 LGI1O95970 557 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 IGHG1P01857 330 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 CD6P30203 668 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 TRMT12Q53H54 448 aaKnown RBP12.97□□□□□ -0.33
CPSF1-212ENST00000616140 AADACL4Q5VUY2 407 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 FAM219BQ5XKK7 198 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 IDO2Q6ZQW0 420 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 SIAH3Q8IW03 269 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 PRR18Q8N4B5 295 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 ZNF775Q96BV0 537 aaPredicted RBP12.97□□□□□ -0.33
CPSF1-212ENST00000616140 MAP3K3Q99759 626 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 MBNL1Q9NR56 388 aaKnown RBP12.97□□□□□ -0.33
CPSF1-212ENST00000616140 SEMA4GQ9NTN9 838 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 PTTG3PQ9NZH4 202 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 KCNIP1Q9NZI2 227 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 COPS3Q9UNS2 423 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 TRBV11-1A0A0K0K1C0 115 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 TMEM82A0PJX8 343 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 TSPAN11A1L157 253 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 P2RX6O15547 441 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 SLC43A1O75387 559 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 TPT1P13693 172 aaKnown RBP12.97□□□□□ -0.33
CPSF1-212ENST00000616140 MAOAP21397 527 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 S100PP25815 95 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 ETV5P41161 510 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 VEGFCP49767 419 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 S100A12P80511 92 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 TCTN3Q6NUS6 607 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 SLC16A9Q7RTY1 509 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 LACC1Q8IV20 430 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 ZNF695Q8IW36 515 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 SULF2Q8IWU5 870 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 NANOGP1Q8N7R0 232 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 SEC22AQ96IW7 307 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 SMIM3Q9BZL3 60 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 ANKRD19PQ9H560 264 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 UNKLQ9H9P5 680 aaKnown RBP12.97□□□□□ -0.33
CPSF1-212ENST00000616140 A0A1W2PR48 441 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 TMEM212A6NML5 194 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 H3BNC9 293 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 DOK2O60496 412 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 SLC35E2P0CK97 266 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 SERPINA2P20848 420 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 GPLD1P80108 840 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 TMEM52BQ4KMG9 183 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 UBE2NLQ5JXB2 153 aa12.97□□□□□ -0.33
CPSF1-212ENST00000616140 FAM160A2Q8N612 972 aaPredicted RBP12.97□□□□□ -0.33
CPSF1-212ENST00000616140 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 HMGN4O00479 90 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 HCRTR1O43613 425 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 GPX5O75715 221 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 ETHE1O95571 254 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 IFNA1P01562 189 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 CD79AP11912 226 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 TMEM176BQ3YBM2 270 aaPredicted RBP12.96□□□□□ -0.33
CPSF1-212ENST00000616140 KIAA0895LQ68EN5 471 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 UNQ6126/PRO20091Q6UXV3 157 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 PM20D2Q8IYS1 436 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 FAM109AQ8N4B1 249 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 OR5T1Q8NG75 326 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 OR51D1Q8NGF3 324 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 TCEAL3Q969E4 200 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 MS4A6EQ96DS6 147 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 FCRL1Q96LA6 429 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 CNTNAP3BQ96NU0 1288 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 RHNO1Q9BSD3 238 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 ULBP2Q9BZM5 246 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 OR10A2Q9H208 303 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 ZMAT3Q9HA38 289 aaKnown RBP12.96□□□□□ -0.33
CPSF1-212ENST00000616140 MOKQ9UQ07 419 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 LRP5O75197 1615 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 TMEM129A0AVI4 362 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 BLACEA4D250 179 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 PRRT4C9JH25 899 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 NUDT1P36639 197 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms