RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 LMF1Q96S06 567 aa18.49■□□□□ 0.55
SHKBP1-225ENST00000600733 MFRPQ9BY79 579 aa18.49■□□□□ 0.55
SHKBP1-225ENST00000600733 NMNAT2Q9BZQ4 307 aa18.49■□□□□ 0.55
SHKBP1-225ENST00000600733 SEMA6CQ9H3T2 930 aa18.49■□□□□ 0.55
SHKBP1-225ENST00000600733 NKIRAS2Q9NYR9 191 aa18.49■□□□□ 0.55
SHKBP1-225ENST00000600733 ZNF337Q9Y3M9 751 aa18.49■□□□□ 0.55
SHKBP1-225ENST00000600733 ZNF879B4DU55 563 aa18.49■□□□□ 0.55
SHKBP1-225ENST00000600733 ZNF593O00488 134 aaPredicted RBP18.49■□□□□ 0.55
SHKBP1-225ENST00000600733 ZFPL1O95159 310 aa18.49■□□□□ 0.55
SHKBP1-225ENST00000600733 OR3A3P47888 321 aa18.49■□□□□ 0.55
SHKBP1-225ENST00000600733 FAM199XQ6PEV8 388 aaPredicted RBP18.49■□□□□ 0.55
SHKBP1-225ENST00000600733 MCATQ8IVS2 390 aaKnown RBP18.49■□□□□ 0.55
SHKBP1-225ENST00000600733 SERPINA12Q8IW75 414 aa18.49■□□□□ 0.55
SHKBP1-225ENST00000600733 RGP1Q92546 391 aaPredicted RBP18.49■□□□□ 0.55
SHKBP1-225ENST00000600733 GPR137Q96N19 417 aa18.49■□□□□ 0.55
SHKBP1-225ENST00000600733 G6PC3Q9BUM1 346 aa18.49■□□□□ 0.55
SHKBP1-225ENST00000600733 RANBP3Q9H6Z4 567 aaPredicted RBP18.49■□□□□ 0.55
SHKBP1-225ENST00000600733 KIR2DS5A0A0G2JLQ3 304 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 A0A0G2JNG1 304 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 EFCAB7A8K855 629 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 BLOC1S5-TXNDC5H3BN57 136 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 KIR2DS3K7RE56 304 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 GSTZ1O43708 216 aaPredicted RBP18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 OR7A10O76100 309 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 GUSBP08236 651 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 RNH1P13489 461 aaKnown RBP18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 GPR3P46089 330 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 DLX2Q07687 328 aaPredicted RBP18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 KIR2DS5Q14953 304 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 ZBTB37Q5TC79 503 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 ARMC6Q6NXE6 501 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 LEG1Q6P5S2 330 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 TMEM184AQ6ZMB5 413 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 BTN2A1Q7KYR7 527 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 ZNF511Q8NB15 262 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 Q96M85 177 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 TSPAN10Q9H1Z9 355 aaPredicted RBP18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 POMT2Q9UKY4 750 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 TMA7Q9Y2S6 64 aaKnown RBP18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 CLDN16Q9Y5I7 305 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 SPEGQ15772 3267 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 CACNA1IQ9P0X4 2223 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 IGKV1D-42A0A075B6H8 117 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 IFITM5A6NNB3 132 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 GPR171O14626 319 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 ARPC3O15145 178 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 GMDSO60547 372 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 PRAMEF2O60811 474 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 POU3F3P20264 500 aaPredicted RBP18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 CDKN2AP42771 156 aaKnown RBP18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 P2RX3P56373 397 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 PER3P56645 1201 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 RPS4XP62701 263 aaKnown RBP18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 C19orf57Q0VDD7 668 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 EIF2B5Q13144 721 aaKnown RBP18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 TMEM255AQ5JRV8 349 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 LINC01590Q5TEZ4 76 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 STPG1Q5TH74 334 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 SLC22A10Q63ZE4 541 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 SFRP4Q6FHJ7 346 aaPredicted RBP18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 ZNF782Q6ZMW2 699 aaPredicted RBP18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 METTL27Q8N6F8 245 aaPredicted RBP18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 C19orf47Q8N9M1 422 aaKnown RBP18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 RNF166Q96A37 237 aaPredicted RBP18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 SLC25A38Q96DW6 304 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 DGAT2Q96PD7 388 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 UCKL1Q9NWZ5 548 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 FLVCR2Q9UPI3 526 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 RCE1Q9Y256 329 aa18.48■□□□□ 0.55
SHKBP1-225ENST00000600733 CTDSPLO15194 276 aa18.47■□□□□ 0.55
SHKBP1-225ENST00000600733 CTNSO60931 367 aa18.47■□□□□ 0.55
SHKBP1-225ENST00000600733 PPM1BO75688 479 aa18.47■□□□□ 0.55
SHKBP1-225ENST00000600733 SEMA4FO95754 770 aa18.47■□□□□ 0.55
SHKBP1-225ENST00000600733 CD1AP06126 327 aa18.47■□□□□ 0.55
SHKBP1-225ENST00000600733 AQP2P41181 271 aa18.47■□□□□ 0.55
SHKBP1-225ENST00000600733 BAIAP2L2Q6UXY1 529 aa18.47■□□□□ 0.55
SHKBP1-225ENST00000600733 HMGB4Q8WW32 186 aa18.47■□□□□ 0.55
SHKBP1-225ENST00000600733 ALG12Q9BV10 488 aa18.47■□□□□ 0.55
SHKBP1-225ENST00000600733 C20orf85Q9H1P6 137 aa18.47■□□□□ 0.55
SHKBP1-225ENST00000600733 NKX2-4Q9H2Z4 354 aa18.47■□□□□ 0.55
SHKBP1-225ENST00000600733 PRTFDC1Q9NRG1 225 aa18.47■□□□□ 0.55
SHKBP1-225ENST00000600733 MRPL39Q9NYK5 338 aaKnown RBP18.47■□□□□ 0.55
SHKBP1-225ENST00000600733 ZNF281Q9Y2X9 895 aa18.47■□□□□ 0.55
SHKBP1-225ENST00000600733 PIAS3Q9Y6X2 628 aa18.47■□□□□ 0.55
SHKBP1-225ENST00000600733 AIPO00170 330 aa18.47■□□□□ 0.55
SHKBP1-225ENST00000600733 GPRIN2O60269 458 aa18.47■□□□□ 0.55
SHKBP1-225ENST00000600733 NOS1APO75052 506 aaPredicted RBP18.47■□□□□ 0.55
SHKBP1-225ENST00000600733 RPP14O95059 124 aaKnown RBP18.47■□□□□ 0.55
SHKBP1-225ENST00000600733 GABRG2P18507 467 aa18.47■□□□□ 0.55
SHKBP1-225ENST00000600733 UQCRC1P31930 480 aa18.47■□□□□ 0.55
SHKBP1-225ENST00000600733 DYRK1AQ13627 763 aa18.47■□□□□ 0.55
SHKBP1-225ENST00000600733 SHHQ15465 462 aa18.47■□□□□ 0.55
SHKBP1-225ENST00000600733 SLC35D3Q5M8T2 416 aa18.47■□□□□ 0.55
SHKBP1-225ENST00000600733 FCRLAQ7L513 359 aa18.47■□□□□ 0.55
SHKBP1-225ENST00000600733 LUZP2Q86TE4 346 aa18.47■□□□□ 0.55
SHKBP1-225ENST00000600733 OR6C4Q8NGE1 309 aa18.47■□□□□ 0.55
SHKBP1-225ENST00000600733 C7orf50Q9BRJ6 194 aaKnown RBP18.47■□□□□ 0.55
SHKBP1-225ENST00000600733 OR10A5Q9H207 317 aa18.47■□□□□ 0.55
SHKBP1-225ENST00000600733 LIN7BQ9HAP6 207 aa18.47■□□□□ 0.55
SHKBP1-225ENST00000600733 ALPK2Q86TB3 2170 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms