RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 RPS26P11Q5JNZ5 115 aaPredicted RBP7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 PRR31Q5SQ13 230 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 LIPNQ5VXI9 398 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 ATG16L1Q676U5 607 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 KRT80Q6KB66 452 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 SPATA21Q7Z572 469 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 EPHX4Q8IUS5 362 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 KIF18AQ8NI77 898 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 WDR60Q8WVS4 1066 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 TMEM45BQ96B21 275 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 SLC25A36Q96CQ1 311 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 KCTD12Q96CX2 325 aaKnown RBP7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 NEURL3Q96EH8 262 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 KCNS3Q9BQ31 491 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 PLK3Q9H4B4 646 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 METTL17Q9H7H0 456 aaPredicted RBP7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 NOX3Q9HBY0 568 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 EXOSC3Q9NQT5 275 aaKnown RBP7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 SLC6A13Q9NSD5 602 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 TMEM45AQ9NWC5 275 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 PARPBPQ9NWS1 579 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 NOP53Q9NZM5 478 aaKnown RBP7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 TMEFF2Q9UIK5 374 aaPredicted RBP7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 PRSS51A0A1B0GVH4 220 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 CFAP73A6NFT4 308 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 OR6C65A6NJZ3 312 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 AQP7P3A6NL99 342 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 FAM157AC9JC47 383 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 ZNF587BE7ETH6 402 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 ZNF208O43345 1280 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 EIF1BO60739 113 aaKnown RBP7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 ALX3O95076 343 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 BPGMP07738 259 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 ADRA2AP08913 450 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 IFNGR1P15260 489 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 IL7RP16871 459 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 CBLP22681 906 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 CXCR1P25024 350 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 IL12AP29459 219 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 CLK1P49759 484 aaKnown RBP7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 CLDN17P56750 224 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 UFM1P61960 85 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 ARF1P84077 181 aaKnown RBP7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 IL1RL1Q01638 556 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 ROR2Q01974 943 aaKnown RBP7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 CASP8Q14790 479 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 MAD2L1BPQ15013 274 aaPredicted RBP7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 ADRM1Q16186 407 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 MIDNQ504T8 468 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 PHYHD1Q5SRE7 291 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 PRAMEF8Q5VWM4 474 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 PRAMEF7Q5VXH5 474 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 DMRTA1Q5VZB9 504 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 TMEM225Q6GV28 225 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 DEF8Q6ZN54 512 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 ZNF836Q6ZNA1 936 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 CREB3L2Q70SY1 520 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 WDFY1Q8IWB7 410 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 CLIP4Q8N3C7 705 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 RFLNBQ8N5W9 214 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 NATD1Q8N6N6 113 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 POMGNT2Q8NAT1 580 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 OR8J2Q8NGG1 315 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 DOK1Q99704 481 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 KATNB1Q9BVA0 655 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 NUF2Q9BZD4 464 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 DYNLRB1Q9NP97 96 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 POLE3Q9NRF9 147 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 MKS1Q9NXB0 559 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 FZR1Q9UM11 496 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 CHST2Q9Y4C5 530 aa7.47□□□□□ -1.21
SHKBP1-220ENST00000599716 IGHV2OR16-5A0A0B4J2B6 119 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 CCDC154A6NI56 674 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 TMEM229AB2RXF0 380 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 E9PBE3 544 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 IGLV1-44P01699 117 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 HPXP02790 462 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 GPIP06744 558 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 TACSTD2P09758 323 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 ALDOCP09972 364 aaKnown RBP7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 NR2F1P10589 423 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 ETFAP13804 333 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 NPR2P20594 1047 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 RPS4Y1P22090 263 aaKnown RBP7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 ACAA2P42765 397 aaKnown RBP7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 ALDH3B1P43353 468 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 HTR3AP46098 478 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 RPS5P46782 204 aaKnown RBP7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 CAPZA2P47755 286 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 PPOXP50336 477 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 CHN2P52757 468 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 SEC24CP53992 1094 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 CDH15P55291 814 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 HNRNPA0Q13151 305 aaKnown RBP7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 SNTB2Q13425 540 aaKnown RBP7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 EFNB3Q15768 340 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 CHI3L2Q15782 390 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 GTDC1Q4AE62 458 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 C1orf140Q5VVS0 124 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 CARD17Q5XLA6 110 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms