RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 BCHEP06276 602 aa10.93□□□□□ -0.66
TRIM28-212ENST00000597995 DBIP07108 87 aaKnown RBP10.93□□□□□ -0.66
TRIM28-212ENST00000597995 IL7RP16871 459 aa10.93□□□□□ -0.66
TRIM28-212ENST00000597995 CCNA2P20248 432 aa10.93□□□□□ -0.66
TRIM28-212ENST00000597995 IGFBP5P24593 272 aa10.93□□□□□ -0.66
TRIM28-212ENST00000597995 CRATP43155 626 aa10.93□□□□□ -0.66
TRIM28-212ENST00000597995 NR4A2P43354 598 aa10.93□□□□□ -0.66
TRIM28-212ENST00000597995 ANXA11P50995 505 aaKnown RBP10.93□□□□□ -0.66
TRIM28-212ENST00000597995 AQP5P55064 265 aa10.93□□□□□ -0.66
TRIM28-212ENST00000597995 DSTNP60981 165 aa10.93□□□□□ -0.66
TRIM28-212ENST00000597995 EPS8Q12929 822 aa10.93□□□□□ -0.66
TRIM28-212ENST00000597995 SLC17A1Q14916 467 aa10.93□□□□□ -0.66
TRIM28-212ENST00000597995 PAGE3Q5JUK9 113 aa10.93□□□□□ -0.66
TRIM28-212ENST00000597995 C6orf10Q5SRN2 563 aa10.93□□□□□ -0.66
TRIM28-212ENST00000597995 TSPO2Q5TGU0 170 aa10.93□□□□□ -0.66
TRIM28-212ENST00000597995 BLOC1S3Q6QNY0 202 aa10.93□□□□□ -0.66
TRIM28-212ENST00000597995 ZNF836Q6ZNA1 936 aa10.93□□□□□ -0.66
TRIM28-212ENST00000597995 CLIP4Q8N3C7 705 aa10.93□□□□□ -0.66
TRIM28-212ENST00000597995 ARIH2OSQ8N7S6 290 aa10.93□□□□□ -0.66
TRIM28-212ENST00000597995 CKAP2Q8WWK9 683 aa10.93□□□□□ -0.66
TRIM28-212ENST00000597995 TMEM45BQ96B21 275 aa10.93□□□□□ -0.66
TRIM28-212ENST00000597995 DDIT4LQ96D03 193 aa10.93□□□□□ -0.66
TRIM28-212ENST00000597995 TMEM19Q96HH6 336 aa10.93□□□□□ -0.66
TRIM28-212ENST00000597995 PIMREGQ9BSJ6 248 aa10.93□□□□□ -0.66
TRIM28-212ENST00000597995 CCDC28BQ9BUN5 200 aa10.93□□□□□ -0.66
TRIM28-212ENST00000597995 PIF1Q9H611 641 aa10.93□□□□□ -0.66
TRIM28-212ENST00000597995 RMND5AQ9H871 391 aa10.93□□□□□ -0.66
TRIM28-212ENST00000597995 OBP2BQ9NPH6 170 aa10.93□□□□□ -0.66
TRIM28-212ENST00000597995 P2RX2Q9UBL9 471 aa10.93□□□□□ -0.66
TRIM28-212ENST00000597995 PRDM4Q9UKN5 801 aa10.93□□□□□ -0.66
TRIM28-212ENST00000597995 TMED7-TICAM2A0A0A6YYA0 188 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 LOC100289279A0A1B0GTE1 492 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 LOC390937A0A1W2PQ73 354 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 ZC3H12DA2A288 527 aaKnown RBP10.92□□□□□ -0.66
TRIM28-212ENST00000597995 SLC35F4A4IF30 521 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 CFAP73A6NFT4 308 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 ATP6V1G2-DDX39BF2Z307 99 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 CLIC1O00299 241 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 POLR3GO15318 223 aaPredicted RBP10.92□□□□□ -0.66
TRIM28-212ENST00000597995 LY6HO94772 140 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 ANP32DO95626 131 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 GKN3PP0CG01 181 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 IMPDH2P12268 514 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 BMP2P12643 396 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 PRG2P13727 222 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 APEHP13798 732 aaKnown RBP10.92□□□□□ -0.66
TRIM28-212ENST00000597995 HNF1AP20823 631 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 TACR3P29371 465 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 POLR2HP52434 150 aaKnown RBP10.92□□□□□ -0.66
TRIM28-212ENST00000597995 SLC25A3Q00325 362 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 GGTLC2Q14390 218 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 RGNQ15493 299 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 FAM120AOSQ5T036 256 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 LRIF1Q5T3J3 769 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 C9orf135Q5VTT2 229 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 PAQR6Q6TCH4 344 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 KLHL24Q6TFL4 600 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 HDXQ7Z353 690 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 ABHD12BQ7Z5M8 362 aaPredicted RBP10.92□□□□□ -0.66
TRIM28-212ENST00000597995 POMGNT2Q8NAT1 580 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 OR52P1PQ8NH57 321 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 MAL2Q969L2 176 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 MSI2Q96DH6 328 aaKnown RBP10.92□□□□□ -0.66
TRIM28-212ENST00000597995 SF3B5Q9BWJ5 86 aaKnown RBP10.92□□□□□ -0.66
TRIM28-212ENST00000597995 PRR14Q9BWN1 585 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 ADAM19Q9H013 955 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 VIPAS39Q9H9C1 493 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 CCDC167Q9P0B6 97 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 MOKQ9UQ07 419 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 TMED7Q9Y3B3 224 aa10.92□□□□□ -0.66
TRIM28-212ENST00000597995 A0A096LPI6 279 aa10.91□□□□□ -0.66
TRIM28-212ENST00000597995 TRBV5-3A0A0A0MS03 114 aa10.91□□□□□ -0.66
TRIM28-212ENST00000597995 HMGB1P1B2RPK0 211 aaPredicted RBP10.91□□□□□ -0.66
TRIM28-212ENST00000597995 SERPINF1P36955 418 aa10.91□□□□□ -0.66
TRIM28-212ENST00000597995 SLC1A3P43003 542 aa10.91□□□□□ -0.66
TRIM28-212ENST00000597995 CRISP3P54108 245 aa10.91□□□□□ -0.66
TRIM28-212ENST00000597995 SNRPD2P62316 118 aaKnown RBP10.91□□□□□ -0.66
TRIM28-212ENST00000597995 SQLEQ14534 574 aa10.91□□□□□ -0.66
TRIM28-212ENST00000597995 LIPNQ5VXI9 398 aa10.91□□□□□ -0.66
TRIM28-212ENST00000597995 PEX5LQ8IYB4 626 aa10.91□□□□□ -0.66
TRIM28-212ENST00000597995 ZNF540Q8NDQ6 660 aa10.91□□□□□ -0.66
TRIM28-212ENST00000597995 SPDL1Q96EA4 605 aa10.91□□□□□ -0.66
TRIM28-212ENST00000597995 FBXO17Q96EF6 278 aa10.91□□□□□ -0.66
TRIM28-212ENST00000597995 THOC1Q96FV9 657 aaKnown RBP10.91□□□□□ -0.66
TRIM28-212ENST00000597995 FOXN4Q96NZ1 517 aa10.91□□□□□ -0.66
TRIM28-212ENST00000597995 SORCS2Q96PQ0 1159 aa10.91□□□□□ -0.66
TRIM28-212ENST00000597995 IKZF5Q9H5V7 419 aa10.91□□□□□ -0.66
TRIM28-212ENST00000597995 CHODLQ9H9P2 273 aa10.91□□□□□ -0.66
TRIM28-212ENST00000597995 A4GALTQ9NPC4 353 aa10.91□□□□□ -0.66
TRIM28-212ENST00000597995 INTS9Q9NV88 658 aaKnown RBP10.91□□□□□ -0.66
TRIM28-212ENST00000597995 VAPAQ9P0L0 249 aa10.91□□□□□ -0.66
TRIM28-212ENST00000597995 FBXO9Q9UK97 447 aaPredicted RBP10.91□□□□□ -0.66
TRIM28-212ENST00000597995 ZNF443Q9Y2A4 671 aaPredicted RBP10.91□□□□□ -0.66
TRIM28-212ENST00000597995 A0A0G2JPF8 293 aa10.9□□□□□ -0.66
TRIM28-212ENST00000597995 HNRNPCL2B2RXH8 293 aa10.9□□□□□ -0.66
TRIM28-212ENST00000597995 HNRNPCL3B7ZW38 293 aa10.9□□□□□ -0.66
TRIM28-212ENST00000597995 B9A039 149 aa10.9□□□□□ -0.66
TRIM28-212ENST00000597995 HAX1O00165 279 aa10.9□□□□□ -0.66
TRIM28-212ENST00000597995 NR5A2O00482 541 aa10.9□□□□□ -0.66
TRIM28-212ENST00000597995 HNRNPCL1O60812 293 aaKnown RBP10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms