RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 HCRTR2O43614 444 aa17.92■□□□□ 0.46
CLIP3-206ENST00000593074 EIF4E2O60573 245 aaKnown RBP17.92■□□□□ 0.46
CLIP3-206ENST00000593074 PTBP1P26599 531 aaKnown RBP eCLIP17.92■□□□□ 0.46
CLIP3-206ENST00000593074 ABCD3P28288 659 aa17.92■□□□□ 0.46
CLIP3-206ENST00000593074 NAA10P41227 235 aaPredicted RBP17.92■□□□□ 0.46
CLIP3-206ENST00000593074 HCCSP53701 268 aa17.92■□□□□ 0.46
CLIP3-206ENST00000593074 LTBQ06643 244 aa17.92■□□□□ 0.46
CLIP3-206ENST00000593074 SCN1BQ07699 218 aa17.92■□□□□ 0.46
CLIP3-206ENST00000593074 CNIH2Q6PI25 160 aa17.92■□□□□ 0.46
CLIP3-206ENST00000593074 METAP1DQ6UB28 335 aaPredicted RBP17.92■□□□□ 0.46
CLIP3-206ENST00000593074 C10orf53Q8N6V4 93 aa17.92■□□□□ 0.46
CLIP3-206ENST00000593074 ABHD4Q8TB40 342 aa17.92■□□□□ 0.46
CLIP3-206ENST00000593074 NAT6Q93015 286 aa17.92■□□□□ 0.46
CLIP3-206ENST00000593074 RNF31Q96EP0 1072 aa17.92■□□□□ 0.46
CLIP3-206ENST00000593074 PELI1Q96FA3 418 aa17.92■□□□□ 0.46
CLIP3-206ENST00000593074 MPDZO75970 2070 aa17.92■□□□□ 0.46
CLIP3-206ENST00000593074 IGHV5-10-1A0A0J9YXX1 117 aa17.92■□□□□ 0.46
CLIP3-206ENST00000593074 OGG1O15527 345 aa17.92■□□□□ 0.46
CLIP3-206ENST00000593074 RFX2P48378 723 aa17.92■□□□□ 0.46
CLIP3-206ENST00000593074 PNLIPRP2P54317 469 aa17.92■□□□□ 0.46
CLIP3-206ENST00000593074 ASAH1Q13510 395 aa17.92■□□□□ 0.46
CLIP3-206ENST00000593074 TP53I3Q53FA7 332 aa17.92■□□□□ 0.46
CLIP3-206ENST00000593074 ALG10Q5BKT4 473 aa17.92■□□□□ 0.46
CLIP3-206ENST00000593074 HBMQ6B0K9 141 aa17.92■□□□□ 0.46
CLIP3-206ENST00000593074 NRARPQ7Z6K4 114 aa17.92■□□□□ 0.46
CLIP3-206ENST00000593074 MS4A15Q8N5U1 240 aa17.92■□□□□ 0.46
CLIP3-206ENST00000593074 HPS1Q92902 700 aa17.92■□□□□ 0.46
CLIP3-206ENST00000593074 KTI12Q96EK9 354 aaPredicted RBP17.92■□□□□ 0.46
CLIP3-206ENST00000593074 Q96M85 177 aa17.92■□□□□ 0.46
CLIP3-206ENST00000593074 LPAR4Q99677 370 aa17.92■□□□□ 0.46
CLIP3-206ENST00000593074 PPP1R3EQ9H7J1 279 aa17.92■□□□□ 0.46
CLIP3-206ENST00000593074 GRIP1Q9Y3R0 1128 aa17.92■□□□□ 0.46
CLIP3-206ENST00000593074 IGLV3-12A0A075B6K2 115 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 AGRPO00253 132 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 NDUFB5O43674 189 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 TXNDC12O95881 172 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 SHC1P29353 583 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 SDHAP31040 664 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 EVX1P49640 407 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 SLC25A1P53007 311 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 RIN1Q13671 783 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 CDK5R1Q15078 307 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 LINC01590Q5TEZ4 76 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 PEAR1Q5VY43 1037 aaPredicted RBP17.91■□□□□ 0.46
CLIP3-206ENST00000593074 MARCH3Q86UD3 253 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 TPRA1Q86W33 373 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 CELF2-AS1Q8N7Q2 184 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 STT3BQ8TCJ2 826 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 CHAC2Q8WUX2 184 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 CDC40O60508 579 aaKnown RBP eCLIP17.91■□□□□ 0.46
CLIP3-206ENST00000593074 SELENOFO60613 162 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 GLCEO94923 617 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 ACVR1BP36896 505 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 CDKN2AP42771 156 aaKnown RBP17.91■□□□□ 0.46
CLIP3-206ENST00000593074 PYDC2Q56P42 97 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 FAM27D1Q5T7N8 215 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 LEG1Q6P5S2 330 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 GHDCQ8N2G8 530 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 EXD3Q8N9H8 876 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 TEX19Q8NA77 164 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 IL17RDQ8NFM7 739 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 GHSRQ92847 366 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 SMIM19Q96E16 107 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 TTTY10Q9BZA0 68 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 TBL1XR1Q9BZK7 514 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 FKRPQ9H9S5 495 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 RARRES3Q9UL19 164 aa17.91■□□□□ 0.46
CLIP3-206ENST00000593074 TNRC6BQ9UPQ9 1833 aaKnown RBP17.9■□□□□ 0.46
CLIP3-206ENST00000593074 SLC19A2O60779 497 aa17.9■□□□□ 0.46
CLIP3-206ENST00000593074 HLA-DQB1P01920 261 aa17.9■□□□□ 0.46
CLIP3-206ENST00000593074 CD1AP06126 327 aa17.9■□□□□ 0.46
CLIP3-206ENST00000593074 MYL9P24844 172 aa17.9■□□□□ 0.46
CLIP3-206ENST00000593074 GBX2P52951 348 aaPredicted RBP17.9■□□□□ 0.46
CLIP3-206ENST00000593074 CTXN1P60606 82 aa17.9■□□□□ 0.46
CLIP3-206ENST00000593074 HSF2Q03933 536 aa17.9■□□□□ 0.46
CLIP3-206ENST00000593074 SHISA6Q6ZSJ9 500 aa17.9■□□□□ 0.46
CLIP3-206ENST00000593074 SPATC1Q76KD6 591 aa17.9■□□□□ 0.46
CLIP3-206ENST00000593074 CEACAM19Q7Z692 300 aa17.9■□□□□ 0.46
CLIP3-206ENST00000593074 JAZF1Q86VZ6 243 aa17.9■□□□□ 0.46
CLIP3-206ENST00000593074 SLC38A9Q8NBW4 561 aa17.9■□□□□ 0.46
CLIP3-206ENST00000593074 LSM14AQ8ND56 463 aaKnown RBP17.9■□□□□ 0.46
CLIP3-206ENST00000593074 OR6K6Q8NGW6 343 aa17.9■□□□□ 0.46
CLIP3-206ENST00000593074 TAAR8Q969N4 342 aa17.9■□□□□ 0.46
CLIP3-206ENST00000593074 KCTD12Q96CX2 325 aaKnown RBP17.9■□□□□ 0.46
CLIP3-206ENST00000593074 ZC3H10Q96K80 434 aaKnown RBP17.9■□□□□ 0.46
CLIP3-206ENST00000593074 CCDC74BQ96LY2 380 aa17.9■□□□□ 0.46
CLIP3-206ENST00000593074 MARCH7Q9H992 704 aa17.9■□□□□ 0.46
CLIP3-206ENST00000593074 NCDNQ9UBB6 729 aa17.9■□□□□ 0.46
CLIP3-206ENST00000593074 ADAM30Q9UKF2 790 aa17.9■□□□□ 0.46
CLIP3-206ENST00000593074 COPS3Q9UNS2 423 aa17.9■□□□□ 0.46
CLIP3-206ENST00000593074 C17orf51A8MQB3 221 aa17.89■□□□□ 0.45
CLIP3-206ENST00000593074 SCRG1O75711 98 aa17.89■□□□□ 0.45
CLIP3-206ENST00000593074 SIRPAP78324 504 aa17.89■□□□□ 0.45
CLIP3-206ENST00000593074 RPL18Q07020 188 aaKnown RBP17.89■□□□□ 0.45
CLIP3-206ENST00000593074 TOMM34Q15785 309 aaPredicted RBP17.89■□□□□ 0.45
CLIP3-206ENST00000593074 NKAIN1Q4KMZ8 207 aa17.89■□□□□ 0.45
CLIP3-206ENST00000593074 EMC4Q5J8M3 183 aa17.89■□□□□ 0.45
CLIP3-206ENST00000593074 NANOGNBQ7Z5D8 188 aa17.89■□□□□ 0.45
CLIP3-206ENST00000593074 OR2I1PQ8NGU4 316 aa17.89■□□□□ 0.45
CLIP3-206ENST00000593074 SNX33Q8WV41 574 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms