RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 P2RY8Q86VZ1 359 aa21.06■□□□□ 0.96
SHMT1-206ENST00000579558 P3H2Q8IVL5 708 aa21.06■□□□□ 0.96
SHMT1-206ENST00000579558 TAMM41Q96BW9 452 aa21.06■□□□□ 0.96
SHMT1-206ENST00000579558 MCHR1Q99705 422 aa21.06■□□□□ 0.96
SHMT1-206ENST00000579558 CCL19Q99731 98 aa21.06■□□□□ 0.96
SHMT1-206ENST00000579558 ESRP2Q9H6T0 727 aaKnown RBP21.06■□□□□ 0.96
SHMT1-206ENST00000579558 SLC7A10Q9NS82 523 aa21.06■□□□□ 0.96
SHMT1-206ENST00000579558 IGKV1D-42A0A075B6H8 117 aa21.05■□□□□ 0.96
SHMT1-206ENST00000579558 TRAV36DV7A0A075B6V5 113 aa21.05■□□□□ 0.96
SHMT1-206ENST00000579558 A0A087WUJ7 227 aa21.05■□□□□ 0.96
SHMT1-206ENST00000579558 OR5H1A6NKK0 313 aa21.05■□□□□ 0.96
SHMT1-206ENST00000579558 FOXG1P55316 489 aaPredicted RBP21.05■□□□□ 0.96
SHMT1-206ENST00000579558 NCMAPQ5T1S8 102 aa21.05■□□□□ 0.96
SHMT1-206ENST00000579558 FAM69AQ5T7M9 428 aa21.05■□□□□ 0.96
SHMT1-206ENST00000579558 SEZ6L2Q6UXD5 910 aa21.05■□□□□ 0.96
SHMT1-206ENST00000579558 SSX8Q7RTT4 187 aa21.05■□□□□ 0.96
SHMT1-206ENST00000579558 CALHM3Q86XJ0 350 aa21.05■□□□□ 0.96
SHMT1-206ENST00000579558 PIGTQ969N2 578 aa21.05■□□□□ 0.96
SHMT1-206ENST00000579558 TAAR8Q969N4 342 aa21.05■□□□□ 0.96
SHMT1-206ENST00000579558 SLCO5A1Q9H2Y9 848 aa21.05■□□□□ 0.96
SHMT1-206ENST00000579558 RNF115Q9Y4L5 304 aa21.05■□□□□ 0.96
SHMT1-206ENST00000579558 FMO6PO60774 539 aa21.04■□□□□ 0.96
SHMT1-206ENST00000579558 CD3EP07766 207 aa21.04■□□□□ 0.96
SHMT1-206ENST00000579558 ITGA5P08648 1049 aa21.04■□□□□ 0.96
SHMT1-206ENST00000579558 CD247P20963 164 aa21.04■□□□□ 0.96
SHMT1-206ENST00000579558 CDH12P55289 794 aa21.04■□□□□ 0.96
SHMT1-206ENST00000579558 C9orf135Q5VTT2 229 aa21.04■□□□□ 0.96
SHMT1-206ENST00000579558 CREB3L2Q70SY1 520 aa21.04■□□□□ 0.96
SHMT1-206ENST00000579558 CCDC80Q76M96 950 aa21.04■□□□□ 0.96
SHMT1-206ENST00000579558 TGIF2LYQ8IUE0 185 aa21.04■□□□□ 0.96
SHMT1-206ENST00000579558 POU5F2Q8N7G0 328 aa21.04■□□□□ 0.96
SHMT1-206ENST00000579558 OR6T1Q8NGN1 323 aa21.04■□□□□ 0.96
SHMT1-206ENST00000579558 VANGL1Q8TAA9 524 aaPredicted RBP21.04■□□□□ 0.96
SHMT1-206ENST00000579558 RCN3Q96D15 328 aa21.04■□□□□ 0.96
SHMT1-206ENST00000579558 EPYCQ99645 322 aa21.04■□□□□ 0.96
SHMT1-206ENST00000579558 PIP5K1AQ99755 562 aa21.04■□□□□ 0.96
SHMT1-206ENST00000579558 SEC14L4Q9UDX3 406 aa21.04■□□□□ 0.96
SHMT1-206ENST00000579558 MED13LQ71F56 2210 aa21.04■□□□□ 0.96
SHMT1-206ENST00000579558 PDLIM1O00151 329 aa21.03■□□□□ 0.96
SHMT1-206ENST00000579558 HS3ST1O14792 307 aa21.03■□□□□ 0.96
SHMT1-206ENST00000579558 AIM2O14862 343 aa21.03■□□□□ 0.96
SHMT1-206ENST00000579558 CLOCKO15516 846 aa21.03■□□□□ 0.96
SHMT1-206ENST00000579558 CCDC22O60826 627 aa21.03■□□□□ 0.96
SHMT1-206ENST00000579558 FZD7O75084 574 aa21.03■□□□□ 0.96
SHMT1-206ENST00000579558 NPTX1Q15818 432 aa21.03■□□□□ 0.96
SHMT1-206ENST00000579558 SWT1Q5T5J6 900 aaKnown RBP21.03■□□□□ 0.96
SHMT1-206ENST00000579558 OR7E24Q6IFN5 339 aa21.03■□□□□ 0.96
SHMT1-206ENST00000579558 ERICH5Q6P6B1 374 aa21.03■□□□□ 0.96
SHMT1-206ENST00000579558 ZNF613Q6PF04 617 aa21.03■□□□□ 0.96
SHMT1-206ENST00000579558 KDM8Q8N371 416 aa21.03■□□□□ 0.96
SHMT1-206ENST00000579558 POMGNT2Q8NAT1 580 aa21.03■□□□□ 0.96
SHMT1-206ENST00000579558 OR52N5Q8NH56 324 aa21.03■□□□□ 0.96
SHMT1-206ENST00000579558 RASSF5Q8WWW0 418 aa21.03■□□□□ 0.96
SHMT1-206ENST00000579558 AKAP1Q92667 903 aaKnown RBP eCLIP21.03■□□□□ 0.96
SHMT1-206ENST00000579558 USP22Q9UPT9 525 aa21.03■□□□□ 0.96
SHMT1-206ENST00000579558 DSCAMO60469 2012 aa21.03■□□□□ 0.96
SHMT1-206ENST00000579558 ROS1P08922 2347 aa21.03■□□□□ 0.96
SHMT1-206ENST00000579558 ITPR3Q14573 2671 aa21.02■□□□□ 0.96
SHMT1-206ENST00000579558 CPSF4LA6NMK7 179 aaKnown RBP21.02■□□□□ 0.96
SHMT1-206ENST00000579558 M0R082 166 aa21.02■□□□□ 0.96
SHMT1-206ENST00000579558 SMPD2O60906 423 aa21.02■□□□□ 0.96
SHMT1-206ENST00000579558 PTNP21246 168 aa21.02■□□□□ 0.96
SHMT1-206ENST00000579558 CBLP22681 906 aa21.02■□□□□ 0.96
SHMT1-206ENST00000579558 GRPRP30550 384 aa21.02■□□□□ 0.96
SHMT1-206ENST00000579558 BSPH1Q075Z2 132 aa21.02■□□□□ 0.96
SHMT1-206ENST00000579558 GABRA6Q16445 453 aa21.02■□□□□ 0.96
SHMT1-206ENST00000579558 ENTPD8Q5MY95 495 aa21.02■□□□□ 0.96
SHMT1-206ENST00000579558 NIPAL3Q6P499 406 aa21.02■□□□□ 0.96
SHMT1-206ENST00000579558 EPHX4Q8IUS5 362 aa21.02■□□□□ 0.96
SHMT1-206ENST00000579558 OR4D11Q8NGI4 311 aa21.02■□□□□ 0.96
SHMT1-206ENST00000579558 RP9Q8TA86 221 aaKnown RBP21.02■□□□□ 0.96
SHMT1-206ENST00000579558 ZNF417Q8TAU3 575 aa21.02■□□□□ 0.96
SHMT1-206ENST00000579558 ZNF583Q96ND8 569 aa21.02■□□□□ 0.96
SHMT1-206ENST00000579558 MUS81Q96NY9 551 aa21.02■□□□□ 0.96
SHMT1-206ENST00000579558 ZNF587Q96SQ5 575 aaPredicted RBP21.02■□□□□ 0.96
SHMT1-206ENST00000579558 DPRXA6NFQ7 191 aa21.01■□□□□ 0.95
SHMT1-206ENST00000579558 KRT33AO76009 404 aa21.01■□□□□ 0.95
SHMT1-206ENST00000579558 ZNF43P17038 809 aa21.01■□□□□ 0.95
SHMT1-206ENST00000579558 MPGP29372 298 aa21.01■□□□□ 0.95
SHMT1-206ENST00000579558 SELENOPP49908 381 aa21.01■□□□□ 0.95
SHMT1-206ENST00000579558 CRYBA2P53672 197 aa21.01■□□□□ 0.95
SHMT1-206ENST00000579558 ADAM8P78325 824 aa21.01■□□□□ 0.95
SHMT1-206ENST00000579558 IL1RL1Q01638 556 aa21.01■□□□□ 0.95
SHMT1-206ENST00000579558 TGFBR3Q03167 851 aa21.01■□□□□ 0.95
SHMT1-206ENST00000579558 VEZF1Q14119 521 aa21.01■□□□□ 0.95
SHMT1-206ENST00000579558 MFSD13AQ14CX5 517 aa21.01■□□□□ 0.95
SHMT1-206ENST00000579558 SPATA21Q7Z572 469 aa21.01■□□□□ 0.95
SHMT1-206ENST00000579558 ABHD12BQ7Z5M8 362 aaPredicted RBP21.01■□□□□ 0.95
SHMT1-206ENST00000579558 RBM45Q8IUH3 476 aaKnown RBP21.01■□□□□ 0.95
SHMT1-206ENST00000579558 OR6S1Q8NH40 331 aa21.01■□□□□ 0.95
SHMT1-206ENST00000579558 OXGR1Q96P68 337 aa21.01■□□□□ 0.95
SHMT1-206ENST00000579558 TMEM43Q9BTV4 400 aa21.01■□□□□ 0.95
SHMT1-206ENST00000579558 AMBRA1Q9C0C7 1298 aa21.01■□□□□ 0.95
SHMT1-206ENST00000579558 NPAP1Q9NZP6 1156 aa21.01■□□□□ 0.95
SHMT1-206ENST00000579558 B3GALT5Q9Y2C3 310 aa21.01■□□□□ 0.95
SHMT1-206ENST00000579558 SLC25A15Q9Y619 301 aa21.01■□□□□ 0.95
SHMT1-206ENST00000579558 A0A1W2PR80 420 aa21■□□□□ 0.95
SHMT1-206ENST00000579558 FAM220BPB1ANY3 271 aa21■□□□□ 0.95
SHMT1-206ENST00000579558 CHP2O43745 196 aa21■□□□□ 0.95
SHMT1-206ENST00000579558 COX4I1P13073 169 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms