RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 RACK1P63244 317 aaKnown RBP9.21□□□□□ -0.94
VPS53-220ENST00000576149 SKP2Q13309 424 aa9.21□□□□□ -0.94
VPS53-220ENST00000576149 IL10RAQ13651 578 aa9.21□□□□□ -0.94
VPS53-220ENST00000576149 TATDN3Q17R31 274 aa9.21□□□□□ -0.94
VPS53-220ENST00000576149 DEFB133Q30KQ1 61 aa9.21□□□□□ -0.94
VPS53-220ENST00000576149 NKAIN2Q5VXU1 208 aa9.21□□□□□ -0.94
VPS53-220ENST00000576149 TMEM53Q6P2H8 277 aa9.21□□□□□ -0.94
VPS53-220ENST00000576149 RPL22L1Q6P5R6 122 aaKnown RBP9.21□□□□□ -0.94
VPS53-220ENST00000576149 OGFOD3Q6PK18 319 aa9.21□□□□□ -0.94
VPS53-220ENST00000576149 GHDCQ8N2G8 530 aa9.21□□□□□ -0.94
VPS53-220ENST00000576149 MOSPD2Q8NHP6 518 aa9.21□□□□□ -0.94
VPS53-220ENST00000576149 TRMT10AQ8TBZ6 339 aaKnown RBP9.21□□□□□ -0.94
VPS53-220ENST00000576149 PHOSPHO1Q8TCT1 267 aa9.21□□□□□ -0.94
VPS53-220ENST00000576149 UBASH3BQ8TF42 649 aa9.21□□□□□ -0.94
VPS53-220ENST00000576149 LIPHQ8WWY8 451 aa9.21□□□□□ -0.94
VPS53-220ENST00000576149 RASD2Q96D21 266 aa9.21□□□□□ -0.94
VPS53-220ENST00000576149 ZDHHC12Q96GR4 267 aa9.21□□□□□ -0.94
VPS53-220ENST00000576149 DMRTB1Q96MA1 342 aa9.21□□□□□ -0.94
VPS53-220ENST00000576149 MARVELD1Q9BSK0 173 aa9.21□□□□□ -0.94
VPS53-220ENST00000576149 WACQ9BTA9 647 aa9.21□□□□□ -0.94
VPS53-220ENST00000576149 ZCCHC4Q9H5U6 513 aa9.21□□□□□ -0.94
VPS53-220ENST00000576149 EXOSC3Q9NQT5 275 aaKnown RBP9.21□□□□□ -0.94
VPS53-220ENST00000576149 NCDNQ9UBB6 729 aa9.21□□□□□ -0.94
VPS53-220ENST00000576149 COPS3Q9UNS2 423 aa9.21□□□□□ -0.94
VPS53-220ENST00000576149 SPTBP11277 2137 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 LMO7DNF2Z398 122 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 SCDO00767 359 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 SELENOFO60613 162 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 TFPIP10646 304 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 HPGDP15428 266 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 GRK6P43250 576 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 KCNAB1Q14722 419 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 ZNF74Q16587 644 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 CCDC58Q4VC31 144 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 ZNF57Q68EA5 555 aaPredicted RBP9.2□□□□□ -0.94
VPS53-220ENST00000576149 CBLN3Q6UW01 205 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 APOOLQ6UXV4 268 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 TDHQ8IZJ6 230 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 TRIM63Q969Q1 353 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 UPRTQ96BW1 309 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 HSPA12BQ96MM6 686 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 SLC46A1Q96NT5 459 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 RBM14Q96PK6 669 aaKnown RBP9.2□□□□□ -0.94
VPS53-220ENST00000576149 THAP7Q9BT49 309 aaPredicted RBP9.2□□□□□ -0.94
VPS53-220ENST00000576149 TGIF2Q9GZN2 237 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 HDHD2Q9H0R4 259 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 NXF5Q9H1B4 397 aaKnown RBP9.2□□□□□ -0.94
VPS53-220ENST00000576149 CCDC86Q9H6F5 360 aaKnown RBP9.2□□□□□ -0.94
VPS53-220ENST00000576149 RANGRFQ9HD47 186 aaPredicted RBP9.2□□□□□ -0.94
VPS53-220ENST00000576149 PNO1Q9NRX1 252 aaKnown RBP9.2□□□□□ -0.94
VPS53-220ENST00000576149 CUTCQ9NTM9 273 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 GNG8Q9UK08 70 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 HIF3AQ9Y2N7 669 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 MMACHCQ9Y4U1 282 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 TRBV2A0A0J9YWF9 115 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 NOTOA8MTQ0 251 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 TMEM150CB9EJG8 249 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 BLOC1S5-TXNDC5H3BN57 136 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 MBTPS2O43462 519 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 LANCL1O43813 399 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 FZD7O75084 574 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 SLC43A1O75387 559 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 GATBO75879 557 aaKnown RBP9.2□□□□□ -0.94
VPS53-220ENST00000576149 ARL6IP5O75915 188 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 GLCEO94923 617 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 UTS2O95399 124 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 IGKV3-11P04433 115 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 UCHL1P09936 223 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 MST1P26927 711 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 RCVRNP35243 200 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 RORAP35398 523 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 AQP2P41181 271 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 OR1D4P47884 311 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 HNRNPKP61978 463 aaKnown RBP eCLIP9.2□□□□□ -0.94
VPS53-220ENST00000576149 HSF2Q03933 536 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 TDGQ13569 410 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 C14orf28Q4W4Y0 310 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 CEP78Q5JTW2 689 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 LINC01590Q5TEZ4 76 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 TTLL10Q6ZVT0 673 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 LRRC75AQ8NAA5 344 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 CADM4Q8NFZ8 388 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 OR8H1Q8NGG4 311 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 OR6K6Q8NGW6 343 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 RFT1Q96AA3 541 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 MRPL48Q96GC5 212 aaKnown RBP9.2□□□□□ -0.94
VPS53-220ENST00000576149 OR1F2PQ96R84 312 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 ABHD1Q96SE0 405 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 PHF7Q9BWX1 381 aaPredicted RBP9.2□□□□□ -0.94
VPS53-220ENST00000576149 ACOXLQ9NUZ1 547 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 ALG5Q9Y673 324 aa9.2□□□□□ -0.94
VPS53-220ENST00000576149 THADAQ6YHU6 1953 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 IGKV3D-11A0A0A0MRZ8 115 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 TEX13CA0A0J9YWL9 993 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 A0A1B0GVC2 190 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 A0A1W2PPK0 400 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 FAM172BPA6NC97 362 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 FRG2CA6NGY1 282 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 A6NIN4 97 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 ZNF264O43296 627 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms