RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 ASB6Q9NWX5 421 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 ADPRHL2Q9NX46 363 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 KLHL14Q9P2G3 628 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 ING1Q9UK53 422 aaPredicted RBP7.17□□□□□ -1.26
VPS53-214ENST00000572607 CHST2Q9Y4C5 530 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 CAPN7Q9Y6W3 813 aa7.17□□□□□ -1.26
VPS53-214ENST00000572607 FLNAP21333 2647 aaKnown RBP7.16□□□□□ -1.26
VPS53-214ENST00000572607 AQP7P3A6NL99 342 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.16□□□□□ -1.26
VPS53-214ENST00000572607 ZNF814B7Z6K7 855 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 M0R082 166 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 MRASO14807 208 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 KRT33AO76009 404 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 AKR7A3O95154 331 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 IGHV3-9P01782 118 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 THBDP07204 575 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 CD3EP07766 207 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 GGT1P19440 569 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 ADSLP30566 484 aaPredicted RBP7.16□□□□□ -1.26
VPS53-214ENST00000572607 MDH1P40925 334 aaKnown RBP7.16□□□□□ -1.26
VPS53-214ENST00000572607 H3F3AP84243 136 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 IL1RL1Q01638 556 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 TGFBR3Q03167 851 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 FAPQ12884 760 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 BNIP2Q12982 314 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 KLF10Q13118 480 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 SELPLGQ14242 412 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 PPA1Q15181 289 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 TSC22D1Q15714 1073 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 TAB1Q15750 504 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 ACKR1Q16570 336 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 FAM91A1Q658Y4 838 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 REP15Q6BDI9 236 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 ULK3Q6PHR2 472 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 ZNF704Q6ZNC4 412 aaPredicted RBP7.16□□□□□ -1.26
VPS53-214ENST00000572607 AAED1Q7RTV5 226 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 ABHD12BQ7Z5M8 362 aaPredicted RBP7.16□□□□□ -1.26
VPS53-214ENST00000572607 P2RY8Q86VZ1 359 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 C10orf111Q8N326 155 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 TMEM99Q8N816 258 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 LSMEM1Q8N8F7 131 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 OR8J3Q8NGG0 315 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 OR10A6Q8NH74 314 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 MFSD8Q8NHS3 518 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 ZNF417Q8TAU3 575 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 SLC38A4Q969I6 547 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 SLC25A36Q96CQ1 311 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 ZNF587Q96SQ5 575 aaPredicted RBP7.16□□□□□ -1.26
VPS53-214ENST00000572607 EPYCQ99645 322 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 ECSITQ9BQ95 431 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 PIF1Q9H611 641 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 KAT8Q9H7Z6 458 aaKnown RBP7.16□□□□□ -1.26
VPS53-214ENST00000572607 SAR1AQ9NR31 198 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 GID8Q9NWU2 228 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 TAS2R16Q9NYV7 291 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 RASD1Q9Y272 281 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 RNF115Q9Y4L5 304 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 FLVCR1Q9Y5Y0 555 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 MED12LQ86YW9 2145 aa7.16□□□□□ -1.26
VPS53-214ENST00000572607 NSD1Q96L73 2696 aaPredicted RBP7.15□□□□□ -1.26
VPS53-214ENST00000572607 TRAV36DV7A0A075B6V5 113 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 LOC100653049A0A140TA62 436 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 A0A1B0GWA3 101 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 OR6C65A6NJZ3 312 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 M0QX08 132 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 AIM2O14862 343 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 SLC22A2O15244 555 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 CLOCKO15516 846 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 ARHGEF9O43307 516 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 KLF4O43474 513 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 AKAP8O43823 692 aaKnown RBP7.15□□□□□ -1.26
VPS53-214ENST00000572607 CCDC22O60826 627 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 RAMP1O60894 148 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 SMPD2O60906 423 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 RAD51DO75771 328 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 KRT34O76011 436 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 MFN2O95140 757 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 NPPAP01160 153 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 IFNA14P01570 189 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 OPN1SWP03999 348 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 C8BP07358 591 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 COX5AP20674 150 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 IGHV1-2P23083 117 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 PCGF2P35227 344 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 RPS5P46782 204 aaKnown RBP7.15□□□□□ -1.26
VPS53-214ENST00000572607 PCBP3P57721 371 aaKnown RBP7.15□□□□□ -1.26
VPS53-214ENST00000572607 C1DQ13901 141 aaKnown RBP7.15□□□□□ -1.26
VPS53-214ENST00000572607 SLC17A1Q14916 467 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 MFSD13AQ14CX5 517 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 OR1Q1Q15612 314 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 ADRM1Q16186 407 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 VMACQ2NL98 169 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 TIMM23BQ5SRD1 257 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 OR7E24Q6IFN5 339 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 CGB2Q6NT52 195 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 ERICH5Q6P6B1 374 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 KLHL17Q6TDP4 642 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 C6orf89Q6UWU4 347 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 C22orf34Q6ZV56 151 aa7.15□□□□□ -1.26
VPS53-214ENST00000572607 NET1Q7Z628 596 aaPredicted RBP7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms