RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 H3F3AP84243 136 aa18.38■□□□□ 0.53
VPS53-210ENST00000571456 GK3PQ14409 553 aa18.38■□□□□ 0.53
VPS53-210ENST00000571456 SCAIQ8N9R8 606 aa18.38■□□□□ 0.53
VPS53-210ENST00000571456 C9orf106Q8NAJ2 232 aa18.38■□□□□ 0.53
VPS53-210ENST00000571456 PIK3C3Q8NEB9 887 aa18.38■□□□□ 0.53
VPS53-210ENST00000571456 PIP5K1AQ99755 562 aa18.38■□□□□ 0.53
VPS53-210ENST00000571456 SPOCK3Q9BQ16 436 aa18.38■□□□□ 0.53
VPS53-210ENST00000571456 SRXN1Q9BYN0 137 aa18.38■□□□□ 0.53
VPS53-210ENST00000571456 YY1AP1Q9H869 796 aa18.38■□□□□ 0.53
VPS53-210ENST00000571456 AKAP6Q13023 2319 aa18.38■□□□□ 0.53
VPS53-210ENST00000571456 IGKV1D-42A0A075B6H8 117 aa18.37■□□□□ 0.53
VPS53-210ENST00000571456 A0A1W2PRQ8 180 aa18.37■□□□□ 0.53
VPS53-210ENST00000571456 CYTIPO60759 359 aa18.37■□□□□ 0.53
VPS53-210ENST00000571456 TOXO94900 526 aa18.37■□□□□ 0.53
VPS53-210ENST00000571456 PRSS23O95084 383 aa18.37■□□□□ 0.53
VPS53-210ENST00000571456 PLGP00747 810 aaPredicted RBP18.37■□□□□ 0.53
VPS53-210ENST00000571456 RAP2AP10114 183 aa18.37■□□□□ 0.53
VPS53-210ENST00000571456 IMPDH2P12268 514 aa18.37■□□□□ 0.53
VPS53-210ENST00000571456 MAGEA2P43356 314 aa18.37■□□□□ 0.53
VPS53-210ENST00000571456 ADORA2A-AS1P86434 159 aa18.37■□□□□ 0.53
VPS53-210ENST00000571456 VLDLRP98155 873 aa18.37■□□□□ 0.53
VPS53-210ENST00000571456 DGCR6Q14129 220 aa18.37■□□□□ 0.53
VPS53-210ENST00000571456 SLC25A35Q3KQZ1 300 aa18.37■□□□□ 0.53
VPS53-210ENST00000571456 RPRMLQ8N4K4 120 aa18.37■□□□□ 0.53
VPS53-210ENST00000571456 FAM86B1Q8N7N1 296 aa18.37■□□□□ 0.53
VPS53-210ENST00000571456 ADPRHL1Q8NDY3 354 aa18.37■□□□□ 0.53
VPS53-210ENST00000571456 TMEM239Q8WW34 195 aa18.37■□□□□ 0.53
VPS53-210ENST00000571456 PRSS27Q9BQR3 290 aa18.37■□□□□ 0.53
VPS53-210ENST00000571456 SF3B5Q9BWJ5 86 aaKnown RBP18.37■□□□□ 0.53
VPS53-210ENST00000571456 PIGMQ9H3S5 423 aa18.37■□□□□ 0.53
VPS53-210ENST00000571456 EMC3Q9P0I2 261 aa18.37■□□□□ 0.53
VPS53-210ENST00000571456 RNF6Q9Y252 685 aa18.37■□□□□ 0.53
VPS53-210ENST00000571456 B3GALT5Q9Y2C3 310 aa18.37■□□□□ 0.53
VPS53-210ENST00000571456 EMC9Q9Y3B6 208 aa18.37■□□□□ 0.53
VPS53-210ENST00000571456 MED31Q9Y3C7 131 aa18.37■□□□□ 0.53
VPS53-210ENST00000571456 A0A0G2JNJ9 132 aa18.36■□□□□ 0.53
VPS53-210ENST00000571456 FTCDNL1E5RQL4 147 aa18.36■□□□□ 0.53
VPS53-210ENST00000571456 GPR171O14626 319 aa18.36■□□□□ 0.53
VPS53-210ENST00000571456 SMAD9O15198 467 aaKnown RBP18.36■□□□□ 0.53
VPS53-210ENST00000571456 SS18L1O75177 396 aaPredicted RBP18.36■□□□□ 0.53
VPS53-210ENST00000571456 KRT36O76013 467 aa18.36■□□□□ 0.53
VPS53-210ENST00000571456 MT-ND1P03886 318 aa18.36■□□□□ 0.53
VPS53-210ENST00000571456 THY1P04216 161 aa18.36■□□□□ 0.53
VPS53-210ENST00000571456 H1F0P07305 194 aaKnown RBP18.36■□□□□ 0.53
VPS53-210ENST00000571456 FPR1P21462 350 aa18.36■□□□□ 0.53
VPS53-210ENST00000571456 SLC16A1P53985 500 aa18.36■□□□□ 0.53
VPS53-210ENST00000571456 OR7A5Q15622 319 aa18.36■□□□□ 0.53
VPS53-210ENST00000571456 ABLIM2Q6H8Q1 611 aa18.36■□□□□ 0.53
VPS53-210ENST00000571456 PPP4R4Q6NUP7 873 aa18.36■□□□□ 0.53
VPS53-210ENST00000571456 TSPYL5Q86VY4 417 aaPredicted RBP18.36■□□□□ 0.53
VPS53-210ENST00000571456 ZDHHC21Q8IVQ6 265 aa18.36■□□□□ 0.53
VPS53-210ENST00000571456 C10orf67Q8IYJ2 551 aa18.36■□□□□ 0.53
VPS53-210ENST00000571456 ACOT11Q8WXI4 607 aaPredicted RBP18.36■□□□□ 0.53
VPS53-210ENST00000571456 LRRC46Q96FV0 321 aa18.36■□□□□ 0.53
VPS53-210ENST00000571456 DHRS1Q96LJ7 313 aa18.36■□□□□ 0.53
VPS53-210ENST00000571456 PTDSS2Q9BVG9 487 aa18.36■□□□□ 0.53
VPS53-210ENST00000571456 NMNAT1Q9HAN9 279 aaPredicted RBP18.36■□□□□ 0.53
VPS53-210ENST00000571456 BCO1Q9HAY6 547 aa18.36■□□□□ 0.53
VPS53-210ENST00000571456 KRCC1Q9NPI7 259 aaPredicted RBP18.36■□□□□ 0.53
VPS53-210ENST00000571456 Q9UFV3 132 aa18.36■□□□□ 0.53
VPS53-210ENST00000571456 V9GYQ6 96 aa18.36■□□□□ 0.53
VPS53-210ENST00000571456 NSD1Q96L73 2696 aaPredicted RBP18.35■□□□□ 0.53
VPS53-210ENST00000571456 IGKV3D-15A0A087WSY6 115 aa18.35■□□□□ 0.53
VPS53-210ENST00000571456 DHRS12A0PJE2 317 aa18.35■□□□□ 0.53
VPS53-210ENST00000571456 AQP7P3A6NL99 342 aa18.35■□□□□ 0.53
VPS53-210ENST00000571456 ZNF724A8MTY0 619 aa18.35■□□□□ 0.53
VPS53-210ENST00000571456 AQP8O94778 261 aa18.35■□□□□ 0.53
VPS53-210ENST00000571456 CLDN14O95500 239 aa18.35■□□□□ 0.53
VPS53-210ENST00000571456 RPS5P46782 204 aaKnown RBP18.35■□□□□ 0.53
VPS53-210ENST00000571456 CTBP2P56545 445 aa18.35■□□□□ 0.53
VPS53-210ENST00000571456 GUSBP1Q15486 140 aa18.35■□□□□ 0.53
VPS53-210ENST00000571456 IQCCQ4KMZ1 466 aa18.35■□□□□ 0.53
VPS53-210ENST00000571456 C1orf146Q5VVC0 180 aa18.35■□□□□ 0.53
VPS53-210ENST00000571456 FAM214BQ7L5A3 538 aa18.35■□□□□ 0.53
VPS53-210ENST00000571456 RRM2BQ7LG56 351 aa18.35■□□□□ 0.53
VPS53-210ENST00000571456 LILRB4Q8NHJ6 448 aa18.35■□□□□ 0.53
VPS53-210ENST00000571456 CA5BP1Q8WTZ4 195 aa18.35■□□□□ 0.53
VPS53-210ENST00000571456 SDCCAG3Q96C92 435 aa18.35■□□□□ 0.53
VPS53-210ENST00000571456 KTI12Q96EK9 354 aaPredicted RBP18.35■□□□□ 0.53
VPS53-210ENST00000571456 RAB3IPQ96QF0 476 aaPredicted RBP18.35■□□□□ 0.53
VPS53-210ENST00000571456 SEPHS2Q99611 448 aa18.35■□□□□ 0.53
VPS53-210ENST00000571456 ASPNQ9BXN1 380 aa18.35■□□□□ 0.53
VPS53-210ENST00000571456 FKRPQ9H9S5 495 aa18.35■□□□□ 0.53
VPS53-210ENST00000571456 KLHL13Q9P2N7 655 aa18.35■□□□□ 0.53
VPS53-210ENST00000571456 RASD1Q9Y272 281 aa18.35■□□□□ 0.53
VPS53-210ENST00000571456 RTTNQ86VV8 2226 aa18.35■□□□□ 0.53
VPS53-210ENST00000571456 CSPG4Q6UVK1 2322 aa18.34■□□□□ 0.53
VPS53-210ENST00000571456 TCRBV3S1A0A5B6 114 aa18.34■□□□□ 0.53
VPS53-210ENST00000571456 hCG_2039718K7EN88 272 aa18.34■□□□□ 0.53
VPS53-210ENST00000571456 FFAR1O14842 300 aa18.34■□□□□ 0.53
VPS53-210ENST00000571456 RASGEF1BQ0VAM2 473 aa18.34■□□□□ 0.53
VPS53-210ENST00000571456 CDSNQ15517 529 aa18.34■□□□□ 0.53
VPS53-210ENST00000571456 ANKDD1AQ495B1 522 aa18.34■□□□□ 0.53
VPS53-210ENST00000571456 TMEM201Q5SNT2 666 aa18.34■□□□□ 0.53
VPS53-210ENST00000571456 OTUD3Q5T2D3 398 aaPredicted RBP18.34■□□□□ 0.53
VPS53-210ENST00000571456 WDR88Q6ZMY6 472 aa18.34■□□□□ 0.53
VPS53-210ENST00000571456 TSEN54Q7Z6J9 526 aaKnown RBP18.34■□□□□ 0.53
VPS53-210ENST00000571456 SPATA24Q86W54 205 aa18.34■□□□□ 0.53
VPS53-210ENST00000571456 NKAIN4Q8IVV8 208 aa18.34■□□□□ 0.53
VPS53-210ENST00000571456 CDK20Q8IZL9 346 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms