RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 ZNF587Q96SQ5 575 aaPredicted RBP17.37■□□□□ 0.37
CLN3-225ENST00000566824 NAA11Q9BSU3 229 aaPredicted RBP17.37■□□□□ 0.37
CLN3-225ENST00000566824 POLR2J2Q9GZM3 115 aaKnown RBP17.37■□□□□ 0.37
CLN3-225ENST00000566824 POLR2J3Q9H1A7 115 aaKnown RBP17.37■□□□□ 0.37
CLN3-225ENST00000566824 PIGMQ9H3S5 423 aa17.37■□□□□ 0.37
CLN3-225ENST00000566824 PLSCR4Q9NRQ2 329 aa17.37■□□□□ 0.37
CLN3-225ENST00000566824 C20orf141Q9NUB4 165 aa17.37■□□□□ 0.37
CLN3-225ENST00000566824 KLHL9Q9P2J3 617 aa17.37■□□□□ 0.37
CLN3-225ENST00000566824 HPRP00739 348 aa17.36■□□□□ 0.37
CLN3-225ENST00000566824 SLC16A1P53985 500 aa17.36■□□□□ 0.37
CLN3-225ENST00000566824 FBXL19-AS1Q494R0 122 aa17.36■□□□□ 0.37
CLN3-225ENST00000566824 OFCC1Q8IZS5 231 aa17.36■□□□□ 0.37
CLN3-225ENST00000566824 ZIC4Q8N9L1 334 aa17.36■□□□□ 0.37
CLN3-225ENST00000566824 PIGXQ8TBF5 258 aa17.36■□□□□ 0.37
CLN3-225ENST00000566824 ASB9Q96DX5 294 aa17.36■□□□□ 0.37
CLN3-225ENST00000566824 GALNT8Q9NY28 637 aa17.36■□□□□ 0.37
CLN3-225ENST00000566824 PROCRQ9UNN8 238 aa17.36■□□□□ 0.37
CLN3-225ENST00000566824 ALPK2Q86TB3 2170 aa17.36■□□□□ 0.37
CLN3-225ENST00000566824 NBPF19A0A087WUL8 3843 aa17.35■□□□□ 0.37
CLN3-225ENST00000566824 ZNF724A8MTY0 619 aa17.35■□□□□ 0.37
CLN3-225ENST00000566824 MSTNO14793 375 aa17.35■□□□□ 0.37
CLN3-225ENST00000566824 CH25HO95992 272 aa17.35■□□□□ 0.37
CLN3-225ENST00000566824 MT-ND1P03886 318 aa17.35■□□□□ 0.37
CLN3-225ENST00000566824 CD8BP10966 210 aa17.35■□□□□ 0.37
CLN3-225ENST00000566824 IGFBP2P18065 325 aa17.35■□□□□ 0.37
CLN3-225ENST00000566824 UQCRC1P31930 480 aa17.35■□□□□ 0.37
CLN3-225ENST00000566824 PDK3Q15120 406 aa17.35■□□□□ 0.37
CLN3-225ENST00000566824 TMEM201Q5SNT2 666 aa17.35■□□□□ 0.37
CLN3-225ENST00000566824 TBPL2Q6SJ96 375 aa17.35■□□□□ 0.37
CLN3-225ENST00000566824 C5orf46Q6UWT4 87 aa17.35■□□□□ 0.37
CLN3-225ENST00000566824 SLC46A3Q7Z3Q1 461 aa17.35■□□□□ 0.37
CLN3-225ENST00000566824 C10orf53Q8N6V4 93 aa17.35■□□□□ 0.37
CLN3-225ENST00000566824 ACBD4Q8NC06 268 aa17.35■□□□□ 0.37
CLN3-225ENST00000566824 TMEM239Q8WW34 195 aa17.35■□□□□ 0.37
CLN3-225ENST00000566824 RNASE6Q93091 150 aaKnown RBP17.35■□□□□ 0.37
CLN3-225ENST00000566824 SEPHS2Q99611 448 aa17.35■□□□□ 0.37
CLN3-225ENST00000566824 FNDC11Q9BVV2 318 aa17.35■□□□□ 0.37
CLN3-225ENST00000566824 RBM24Q9BX46 236 aaKnown RBP17.35■□□□□ 0.37
CLN3-225ENST00000566824 GP6Q9HCN6 339 aa17.35■□□□□ 0.37
CLN3-225ENST00000566824 CHST11Q9NPF2 352 aa17.35■□□□□ 0.37
CLN3-225ENST00000566824 B3GAT1Q9P2W7 334 aa17.35■□□□□ 0.37
CLN3-225ENST00000566824 FLVCR1Q9Y5Y0 555 aa17.35■□□□□ 0.37
CLN3-225ENST00000566824 CELSR2Q9HCU4 2923 aa17.34■□□□□ 0.37
CLN3-225ENST00000566824 ENO4A6NNW6 628 aa17.34■□□□□ 0.37
CLN3-225ENST00000566824 MS4A18H0YCH9 400 aa17.34■□□□□ 0.37
CLN3-225ENST00000566824 OR2T1O43869 369 aa17.34■□□□□ 0.37
CLN3-225ENST00000566824 THRBP10828 461 aa17.34■□□□□ 0.37
CLN3-225ENST00000566824 FUT1P19526 365 aa17.34■□□□□ 0.37
CLN3-225ENST00000566824 FAM27E3Q08E93 113 aa17.34■□□□□ 0.37
CLN3-225ENST00000566824 ST3GAL3Q11203 375 aa17.34■□□□□ 0.37
CLN3-225ENST00000566824 ZNF74Q16587 644 aa17.34■□□□□ 0.37
CLN3-225ENST00000566824 EXOC3L2Q2M3D2 409 aa17.34■□□□□ 0.37
CLN3-225ENST00000566824 MS4A18Q3C1V0 323 aa17.34■□□□□ 0.37
CLN3-225ENST00000566824 EEF1A1P5Q5VTE0 462 aa17.34■□□□□ 0.37
CLN3-225ENST00000566824 ZNF787Q6DD87 383 aa17.34■□□□□ 0.37
CLN3-225ENST00000566824 TFAP2EQ6VUC0 442 aa17.34■□□□□ 0.37
CLN3-225ENST00000566824 GPAT4Q86UL3 456 aa17.34■□□□□ 0.37
CLN3-225ENST00000566824 EPHX4Q8IUS5 362 aa17.34■□□□□ 0.37
CLN3-225ENST00000566824 PIK3C3Q8NEB9 887 aa17.34■□□□□ 0.37
CLN3-225ENST00000566824 OR9K2Q8NGE7 335 aa17.34■□□□□ 0.37
CLN3-225ENST00000566824 OR6S1Q8NH40 331 aa17.34■□□□□ 0.37
CLN3-225ENST00000566824 ZNF385AQ96PM9 386 aaKnown RBP17.34■□□□□ 0.37
CLN3-225ENST00000566824 EPYCQ99645 322 aa17.34■□□□□ 0.37
CLN3-225ENST00000566824 MUC13Q9H3R2 512 aa17.34■□□□□ 0.37
CLN3-225ENST00000566824 NMNAT1Q9HAN9 279 aaPredicted RBP17.34■□□□□ 0.37
CLN3-225ENST00000566824 ZKSCAN7Q9P0L1 754 aaPredicted RBP17.34■□□□□ 0.37
CLN3-225ENST00000566824 PRSS50Q9UI38 385 aa17.34■□□□□ 0.37
CLN3-225ENST00000566824 ANKHD1Q8IWZ3 2542 aaKnown RBP17.34■□□□□ 0.37
CLN3-225ENST00000566824 UNC79Q9P2D8 2635 aa17.34■□□□□ 0.37
CLN3-225ENST00000566824 PRR14LQ5THK1 2151 aa17.33■□□□□ 0.37
CLN3-225ENST00000566824 A0A087WUU8 490 aa17.33■□□□□ 0.36
CLN3-225ENST00000566824 HLA-DOBP13765 273 aa17.33■□□□□ 0.36
CLN3-225ENST00000566824 RBM34P42696 430 aaKnown RBP17.33■□□□□ 0.36
CLN3-225ENST00000566824 ERFP50548 548 aa17.33■□□□□ 0.36
CLN3-225ENST00000566824 TRAM2Q15035 370 aa17.33■□□□□ 0.36
CLN3-225ENST00000566824 TMEM225Q6GV28 225 aa17.33■□□□□ 0.36
CLN3-225ENST00000566824 H1FNTQ75WM6 255 aaPredicted RBP17.33■□□□□ 0.36
CLN3-225ENST00000566824 WDFY1Q8IWB7 410 aa17.33■□□□□ 0.36
CLN3-225ENST00000566824 SLC19A3Q9BZV2 496 aa17.33■□□□□ 0.36
CLN3-225ENST00000566824 ENKD1Q9H0I2 346 aa17.33■□□□□ 0.36
CLN3-225ENST00000566824 LRMDAQ9H2I8 198 aa17.33■□□□□ 0.36
CLN3-225ENST00000566824 SLC7A8Q9UHI5 535 aa17.33■□□□□ 0.36
CLN3-225ENST00000566824 POMPQ9Y244 141 aa17.33■□□□□ 0.36
CLN3-225ENST00000566824 TESMINQ9Y4I5 508 aa17.33■□□□□ 0.36
CLN3-225ENST00000566824 ATP5HO75947 161 aa17.32■□□□□ 0.36
CLN3-225ENST00000566824 IGHV3-9P01782 118 aa17.32■□□□□ 0.36
CLN3-225ENST00000566824 RHCEP18577 417 aa17.32■□□□□ 0.36
CLN3-225ENST00000566824 OR3A2P47893 321 aa17.32■□□□□ 0.36
CLN3-225ENST00000566824 TRAP1Q12931 704 aaKnown RBP17.32■□□□□ 0.36
CLN3-225ENST00000566824 NHLRC1Q6VVB1 395 aa17.32■□□□□ 0.36
CLN3-225ENST00000566824 MEX3BQ6ZN04 569 aaKnown RBP17.32■□□□□ 0.36
CLN3-225ENST00000566824 GALNT5Q7Z7M9 940 aa17.32■□□□□ 0.36
CLN3-225ENST00000566824 ZDHHC21Q8IVQ6 265 aa17.32■□□□□ 0.36
CLN3-225ENST00000566824 DHRS1Q96LJ7 313 aa17.32■□□□□ 0.36
CLN3-225ENST00000566824 PIP5K1AQ99755 562 aa17.32■□□□□ 0.36
CLN3-225ENST00000566824 FUZQ9BT04 418 aa17.32■□□□□ 0.36
CLN3-225ENST00000566824 IL1RAPQ9NPH3 570 aa17.32■□□□□ 0.36
CLN3-225ENST00000566824 C6orf203Q9P0P8 240 aaPredicted RBP17.32■□□□□ 0.36
CLN3-225ENST00000566824 NOSIPQ9Y314 301 aaKnown RBP17.32■□□□□ 0.36
CLN3-225ENST00000566824 DCHS2Q6V1P9 2916 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms