RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 MNDAP41218 407 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 NAA10P41227 235 aaPredicted RBP5.7□□□□□ -1.5
CLN3-223ENST00000566472 MMP15P51511 669 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 BLVRAP53004 296 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 PNLIPRP2P54317 469 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 RAG2P55895 527 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 STARD6P59095 220 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 CTXN1P60606 82 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 RPS11P62280 158 aaKnown RBP eCLIP5.7□□□□□ -1.5
CLN3-223ENST00000566472 ERVK-25P63136 954 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 MRPS10P82664 201 aaKnown RBP5.7□□□□□ -1.5
CLN3-223ENST00000566472 MRPS15P82914 257 aaKnown RBP5.7□□□□□ -1.5
CLN3-223ENST00000566472 EGR3Q06889 387 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 EBPQ15125 230 aaKnown RBP5.7□□□□□ -1.5
CLN3-223ENST00000566472 NNATQ16517 81 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 TATDN3Q17R31 274 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 DEFB133Q30KQ1 61 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 NDUFAF6Q330K2 333 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 UBE2NLQ5JXB2 153 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 SNAP47Q5SQN1 464 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 ZNF684Q5T5D7 378 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 HLA-DQA1Q5Y7H0 255 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 ZNF57Q68EA5 555 aaPredicted RBP5.7□□□□□ -1.5
CLN3-223ENST00000566472 TMEM53Q6P2H8 277 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 LEG1Q6P5S2 330 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 TTLL10Q6ZVT0 673 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 HIST3H2AQ7L7L0 130 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 NOXA1Q86UR1 476 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 MISPQ8IVT2 679 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 LRRC17Q8N6Y2 441 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 SAMD12Q8N8I0 201 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 ZNF441Q8N8Z8 693 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 LSM14AQ8ND56 463 aaKnown RBP5.7□□□□□ -1.5
CLN3-223ENST00000566472 PLPP5Q8NEB5 264 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 OR4M2Q8NGB6 313 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 MOSPD2Q8NHP6 518 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 ZNF563Q8TA94 476 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 C1orf216Q8TAB5 229 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 PHOSPHO1Q8TCT1 267 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 C15orf40Q8WUR7 153 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 RLN3Q8WXF3 142 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 HIST1H2ACQ93077 130 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 SHDQ96IW2 340 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 RNF170Q96K19 258 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 NMNAT3Q96T66 252 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 THAP7Q9BT49 309 aaPredicted RBP5.7□□□□□ -1.5
CLN3-223ENST00000566472 ALG12Q9BV10 488 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 HDHD2Q9H0R4 259 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 SLITRK2Q9H156 845 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 PPIL3Q9H2H8 161 aaKnown RBP5.7□□□□□ -1.5
CLN3-223ENST00000566472 LRRN3Q9H3W5 708 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 SLA2Q9H6Q3 261 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 UBE2ZQ9H832 354 aaPredicted RBP5.7□□□□□ -1.5
CLN3-223ENST00000566472 MARCH7Q9H992 704 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 PLEKHA1Q9HB21 404 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 ZNF304Q9HCX3 659 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 NANSQ9NR45 359 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 KLHL1Q9NR64 748 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 PNO1Q9NRX1 252 aaKnown RBP5.7□□□□□ -1.5
CLN3-223ENST00000566472 ING3Q9NXR8 418 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 EMC3Q9P0I2 261 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 AKAP7Q9P0M2 348 aaPredicted RBP5.7□□□□□ -1.5
CLN3-223ENST00000566472 COPS7AQ9UBW8 275 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 MALT1Q9UDY8 824 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 GNG8Q9UK08 70 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 COPS3Q9UNS2 423 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 SRPK3Q9UPE1 567 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 ZNF281Q9Y2X9 895 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 ADAM18Q9Y3Q7 739 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 NUBP2Q9Y5Y2 271 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 ALG5Q9Y673 324 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 CACNG2Q9Y698 323 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 TMEM14AQ9Y6G1 99 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 CLCA3PQ9Y6N3 262 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 RNF215Q9Y6U7 377 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 CEP350Q5VT06 3117 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 FANCMQ8IYD8 2048 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 DOCK9Q9BZ29 2069 aa5.7□□□□□ -1.5
CLN3-223ENST00000566472 CENPFP49454 3210 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 PDE4DIPQ5VU43 2346 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 A0A0B4J293 547 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 TRBV5-5A0A0J9YX44 114 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 A0A1B0GX78 115 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 C7orf66A4D0T2 115 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 NAP1L6A6NFF2 107 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 TTLL8A6PVC2 850 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 AIPO00170 330 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 DVL2O14641 736 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 GNB5O14775 395 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 OIP5O43482 229 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 SULT1B1O43704 296 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 SELENOFO60613 162 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 FZD7O75084 574 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 CPNE3O75131 537 aaKnown RBP5.69□□□□□ -1.5
CLN3-223ENST00000566472 ABHD16AO95870 558 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 DHFRP00374 187 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 IGHMP01871 453 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 C1QBP02746 253 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 BGLAPP02818 100 aa5.69□□□□□ -1.5
CLN3-223ENST00000566472 RAF1P04049 648 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms