RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 PTAFRP25105 342 aa18.21■□□□□ 0.51
CLN3-219ENST00000565778 P2RY4P51582 365 aa18.21■□□□□ 0.51
CLN3-219ENST00000565778 EGR4Q05215 589 aa18.21■□□□□ 0.51
CLN3-219ENST00000565778 ADRM1Q16186 407 aa18.21■□□□□ 0.51
CLN3-219ENST00000565778 PGGHGQ32M88 737 aa18.21■□□□□ 0.51
CLN3-219ENST00000565778 SLC22A25Q6T423 547 aa18.21■□□□□ 0.51
CLN3-219ENST00000565778 ABHD12BQ7Z5M8 362 aaPredicted RBP18.21■□□□□ 0.51
CLN3-219ENST00000565778 DHDDSQ86SQ9 333 aa18.21■□□□□ 0.51
CLN3-219ENST00000565778 ARMC8Q8IUR7 673 aa18.21■□□□□ 0.51
CLN3-219ENST00000565778 DEPDC4Q8N2C3 294 aa18.21■□□□□ 0.51
CLN3-219ENST00000565778 KDM8Q8N371 416 aa18.21■□□□□ 0.51
CLN3-219ENST00000565778 WDR31Q8NA23 367 aa18.21■□□□□ 0.51
CLN3-219ENST00000565778 DNAJA4Q8WW22 397 aaPredicted RBP18.21■□□□□ 0.51
CLN3-219ENST00000565778 SIKE1Q9BRV8 207 aa18.21■□□□□ 0.51
CLN3-219ENST00000565778 ALG2Q9H553 416 aa18.21■□□□□ 0.51
CLN3-219ENST00000565778 C12orf10Q9HB07 376 aa18.21■□□□□ 0.51
CLN3-219ENST00000565778 TMEM27Q9HBJ8 222 aa18.21■□□□□ 0.51
CLN3-219ENST00000565778 SELENONQ9NZV5 590 aa18.21■□□□□ 0.51
CLN3-219ENST00000565778 POU2F3Q9UKI9 436 aa18.21■□□□□ 0.51
CLN3-219ENST00000565778 ANGPT4Q9Y264 503 aa18.21■□□□□ 0.51
CLN3-219ENST00000565778 MAGED1Q9Y5V3 778 aaPredicted RBP18.21■□□□□ 0.51
CLN3-219ENST00000565778 FLNAP21333 2647 aaKnown RBP18.21■□□□□ 0.51
CLN3-219ENST00000565778 OR2T1O43869 369 aa18.2■□□□□ 0.5
CLN3-219ENST00000565778 PNMTP11086 282 aa18.2■□□□□ 0.5
CLN3-219ENST00000565778 CD40P25942 277 aa18.2■□□□□ 0.5
CLN3-219ENST00000565778 HTR2AP28223 471 aa18.2■□□□□ 0.5
CLN3-219ENST00000565778 CDKN1AP38936 164 aa18.2■□□□□ 0.5
CLN3-219ENST00000565778 CDH11P55287 796 aa18.2■□□□□ 0.5
CLN3-219ENST00000565778 NCALDP61601 193 aa18.2■□□□□ 0.5
CLN3-219ENST00000565778 LTBQ06643 244 aa18.2■□□□□ 0.5
CLN3-219ENST00000565778 ALG10BQ5I7T1 473 aa18.2■□□□□ 0.5
CLN3-219ENST00000565778 METTL21CQ5VZV1 264 aa18.2■□□□□ 0.5
CLN3-219ENST00000565778 NIPAL3Q6P499 406 aa18.2■□□□□ 0.5
CLN3-219ENST00000565778 ULK3Q6PHR2 472 aa18.2■□□□□ 0.5
CLN3-219ENST00000565778 COMTD1Q86VU5 262 aa18.2■□□□□ 0.5
CLN3-219ENST00000565778 DPP10Q8N608 796 aa18.2■□□□□ 0.5
CLN3-219ENST00000565778 C1orf162Q8NEQ5 155 aaPredicted RBP18.2■□□□□ 0.5
CLN3-219ENST00000565778 BHLHE22Q8NFJ8 381 aaPredicted RBP18.2■□□□□ 0.5
CLN3-219ENST00000565778 COX4I2Q96KJ9 171 aa18.2■□□□□ 0.5
CLN3-219ENST00000565778 ANKRD27Q96NW4 1050 aa18.2■□□□□ 0.5
CLN3-219ENST00000565778 CGREF1Q99674 301 aa18.2■□□□□ 0.5
CLN3-219ENST00000565778 ZNF385DQ9H6B1 395 aa18.2■□□□□ 0.5
CLN3-219ENST00000565778 SLC17A5Q9NRA2 495 aa18.2■□□□□ 0.5
CLN3-219ENST00000565778 FAIMQ9NVQ4 179 aa18.2■□□□□ 0.5
CLN3-219ENST00000565778 AMDHD2Q9Y303 409 aa18.2■□□□□ 0.5
CLN3-219ENST00000565778 ZFHX3Q15911 3703 aa18.19■□□□□ 0.5
CLN3-219ENST00000565778 LY6G6DO95868 133 aa18.19■□□□□ 0.5
CLN3-219ENST00000565778 SELENOPP49908 381 aa18.19■□□□□ 0.5
CLN3-219ENST00000565778 RGS8P57771 180 aaPredicted RBP18.19■□□□□ 0.5
CLN3-219ENST00000565778 PRPS1P60891 318 aa18.19■□□□□ 0.5
CLN3-219ENST00000565778 NFYCQ13952 458 aa18.19■□□□□ 0.5
CLN3-219ENST00000565778 CYP51A1Q16850 503 aa18.19■□□□□ 0.5
CLN3-219ENST00000565778 C5orf46Q6UWT4 87 aa18.19■□□□□ 0.5
CLN3-219ENST00000565778 C6orf89Q6UWU4 347 aa18.19■□□□□ 0.5
CLN3-219ENST00000565778 RETREG3Q86VR2 466 aa18.19■□□□□ 0.5
CLN3-219ENST00000565778 EPHX4Q8IUS5 362 aa18.19■□□□□ 0.5
CLN3-219ENST00000565778 C17orf78Q8N4C9 275 aa18.19■□□□□ 0.5
CLN3-219ENST00000565778 C11orf65Q8NCR3 313 aa18.19■□□□□ 0.5
CLN3-219ENST00000565778 TSPEARQ8WU66 669 aa18.19■□□□□ 0.5
CLN3-219ENST00000565778 SLC38A4Q969I6 547 aa18.19■□□□□ 0.5
CLN3-219ENST00000565778 TAAR8Q969N4 342 aa18.19■□□□□ 0.5
CLN3-219ENST00000565778 SLC47A1Q96FL8 570 aa18.19■□□□□ 0.5
CLN3-219ENST00000565778 POM121Q96HA1 1249 aa18.19■□□□□ 0.5
CLN3-219ENST00000565778 PTDSS2Q9BVG9 487 aa18.19■□□□□ 0.5
CLN3-219ENST00000565778 AMBRA1Q9C0C7 1298 aa18.19■□□□□ 0.5
CLN3-219ENST00000565778 NF1P21359 2839 aa18.18■□□□□ 0.5
CLN3-219ENST00000565778 OR6C65A6NJZ3 312 aa18.18■□□□□ 0.5
CLN3-219ENST00000565778 FTCDNL1E5RQL4 147 aa18.18■□□□□ 0.5
CLN3-219ENST00000565778 MFN2O95140 757 aa18.18■□□□□ 0.5
CLN3-219ENST00000565778 WNT11O96014 354 aa18.18■□□□□ 0.5
CLN3-219ENST00000565778 ZNF43P17038 809 aa18.18■□□□□ 0.5
CLN3-219ENST00000565778 PTNP21246 168 aa18.18■□□□□ 0.5
CLN3-219ENST00000565778 CBLP22681 906 aa18.18■□□□□ 0.5
CLN3-219ENST00000565778 MTPNP58546 118 aa18.18■□□□□ 0.5
CLN3-219ENST00000565778 IL1RL1Q01638 556 aa18.18■□□□□ 0.5
CLN3-219ENST00000565778 RBBP4Q09028 425 aa18.18■□□□□ 0.5
CLN3-219ENST00000565778 OR1Q1Q15612 314 aa18.18■□□□□ 0.5
CLN3-219ENST00000565778 FAM69AQ5T7M9 428 aa18.18■□□□□ 0.5
CLN3-219ENST00000565778 KLHL24Q6TFL4 600 aa18.18■□□□□ 0.5
CLN3-219ENST00000565778 NET1Q7Z628 596 aaPredicted RBP18.18■□□□□ 0.5
CLN3-219ENST00000565778 SMYD1Q8NB12 490 aa18.18■□□□□ 0.5
CLN3-219ENST00000565778 OXGR1Q96P68 337 aa18.18■□□□□ 0.5
CLN3-219ENST00000565778 TESQ9UGI8 421 aaKnown RBP18.18■□□□□ 0.5
CLN3-219ENST00000565778 TRAV36DV7A0A075B6V5 113 aa18.17■□□□□ 0.5
CLN3-219ENST00000565778 E7EQL1 145 aa18.17■□□□□ 0.5
CLN3-219ENST00000565778 ZNF587BE7ETH6 402 aa18.17■□□□□ 0.5
CLN3-219ENST00000565778 M0QX08 132 aa18.17■□□□□ 0.5
CLN3-219ENST00000565778 CD8AP01732 235 aa18.17■□□□□ 0.5
CLN3-219ENST00000565778 HOXB4P17483 251 aaPredicted RBP18.17■□□□□ 0.5
CLN3-219ENST00000565778 CLDN17P56750 224 aa18.17■□□□□ 0.5
CLN3-219ENST00000565778 LGALS3BPQ08380 585 aa18.17■□□□□ 0.5
CLN3-219ENST00000565778 DMTNQ08495 405 aa18.17■□□□□ 0.5
CLN3-219ENST00000565778 C1DQ13901 141 aaKnown RBP18.17■□□□□ 0.5
CLN3-219ENST00000565778 SELPLGQ14242 412 aa18.17■□□□□ 0.5
CLN3-219ENST00000565778 CLEC12BQ2HXU8 276 aa18.17■□□□□ 0.5
CLN3-219ENST00000565778 AGAP6Q5VW22 663 aa18.17■□□□□ 0.5
CLN3-219ENST00000565778 FAM91A1Q658Y4 838 aa18.17■□□□□ 0.5
CLN3-219ENST00000565778 RANBP3LQ86VV4 465 aaPredicted RBP18.17■□□□□ 0.5
CLN3-219ENST00000565778 PTOV1Q86YD1 416 aa18.17■□□□□ 0.5
CLN3-219ENST00000565778 TRAF4Q9BUZ4 470 aaPredicted RBP18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms