RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 PTNP21246 168 aa15.36■□□□□ 0.05
CLN3-217ENST00000565354 DNASE1P24855 282 aa15.36■□□□□ 0.05
CLN3-217ENST00000565354 ASCL1P50553 236 aa15.36■□□□□ 0.05
CLN3-217ENST00000565354 ADAM8P78325 824 aa15.36■□□□□ 0.05
CLN3-217ENST00000565354 LTBQ06643 244 aa15.36■□□□□ 0.05
CLN3-217ENST00000565354 OTUD3Q5T2D3 398 aaPredicted RBP15.36■□□□□ 0.05
CLN3-217ENST00000565354 VWA1Q6PCB0 445 aa15.36■□□□□ 0.05
CLN3-217ENST00000565354 LUZP2Q86TE4 346 aa15.36■□□□□ 0.05
CLN3-217ENST00000565354 P3H2Q8IVL5 708 aa15.36■□□□□ 0.05
CLN3-217ENST00000565354 MCUR1Q96AQ8 359 aa15.36■□□□□ 0.05
CLN3-217ENST00000565354 MPP4Q96JB8 637 aa15.36■□□□□ 0.05
CLN3-217ENST00000565354 BTBD10Q9BSF8 475 aa15.36■□□□□ 0.05
CLN3-217ENST00000565354 RIMS3Q9UJD0 308 aa15.36■□□□□ 0.05
CLN3-217ENST00000565354 EDARQ9UNE0 448 aa15.36■□□□□ 0.05
CLN3-217ENST00000565354 PLEKHA6Q9Y2H5 1048 aa15.36■□□□□ 0.05
CLN3-217ENST00000565354 FAM32AQ9Y421 112 aaKnown RBP15.36■□□□□ 0.05
CLN3-217ENST00000565354 CYTIPO60759 359 aa15.35■□□□□ 0.05
CLN3-217ENST00000565354 AKR7A3O95154 331 aa15.35■□□□□ 0.05
CLN3-217ENST00000565354 KIR2DL2P43627 348 aaPredicted RBP15.35■□□□□ 0.05
CLN3-217ENST00000565354 YAP1P46937 504 aaKnown RBP15.35■□□□□ 0.05
CLN3-217ENST00000565354 ST3GAL3Q11203 375 aa15.35■□□□□ 0.05
CLN3-217ENST00000565354 BNIP1Q12981 228 aa15.35■□□□□ 0.05
CLN3-217ENST00000565354 PIN1Q13526 163 aaPredicted RBP15.35■□□□□ 0.05
CLN3-217ENST00000565354 FXNQ16595 210 aa15.35■□□□□ 0.05
CLN3-217ENST00000565354 FAM69AQ5T7M9 428 aa15.35■□□□□ 0.05
CLN3-217ENST00000565354 PAQR6Q6TCH4 344 aa15.35■□□□□ 0.05
CLN3-217ENST00000565354 CYP2R1Q6VVX0 501 aa15.35■□□□□ 0.05
CLN3-217ENST00000565354 DHFR2Q86XF0 187 aa15.35■□□□□ 0.05
CLN3-217ENST00000565354 TUSC5Q8IXB3 177 aa15.35■□□□□ 0.05
CLN3-217ENST00000565354 OR6K3Q8NGY3 331 aa15.35■□□□□ 0.05
CLN3-217ENST00000565354 MFSD8Q8NHS3 518 aa15.35■□□□□ 0.05
CLN3-217ENST00000565354 CCDC124Q96CT7 223 aaKnown RBP15.35■□□□□ 0.05
CLN3-217ENST00000565354 KTI12Q96EK9 354 aaPredicted RBP15.35■□□□□ 0.05
CLN3-217ENST00000565354 PYURFQ96I23 114 aa15.35■□□□□ 0.05
CLN3-217ENST00000565354 PRRC1Q96M27 445 aa15.35■□□□□ 0.05
CLN3-217ENST00000565354 LRGUKQ96M69 825 aa15.35■□□□□ 0.05
CLN3-217ENST00000565354 TMEM43Q9BTV4 400 aa15.35■□□□□ 0.05
CLN3-217ENST00000565354 FNDC11Q9BVV2 318 aa15.35■□□□□ 0.05
CLN3-217ENST00000565354 AMBRA1Q9C0C7 1298 aa15.35■□□□□ 0.05
CLN3-217ENST00000565354 CLEC4MQ9H2X3 399 aaPredicted RBP15.35■□□□□ 0.05
CLN3-217ENST00000565354 C12orf49Q9H741 205 aa15.35■□□□□ 0.05
CLN3-217ENST00000565354 GP6Q9HCN6 339 aa15.35■□□□□ 0.05
CLN3-217ENST00000565354 EMC3Q9P0I2 261 aa15.35■□□□□ 0.05
CLN3-217ENST00000565354 ACTR3BQ9P1U1 418 aa15.35■□□□□ 0.05
CLN3-217ENST00000565354 KLHL13Q9P2N7 655 aa15.35■□□□□ 0.05
CLN3-217ENST00000565354 FN1P02751 2386 aaKnown RBP15.35■□□□□ 0.05
CLN3-217ENST00000565354 KPNA4O00629 521 aaPredicted RBP15.34■□□□□ 0.05
CLN3-217ENST00000565354 NPIPB7O75200 414 aa15.34■□□□□ 0.05
CLN3-217ENST00000565354 TNFSF13O75888 250 aa15.34■□□□□ 0.05
CLN3-217ENST00000565354 DNAJC8O75937 253 aaPredicted RBP15.34■□□□□ 0.05
CLN3-217ENST00000565354 YES1P07947 543 aa15.34■□□□□ 0.05
CLN3-217ENST00000565354 CBLP22681 906 aa15.34■□□□□ 0.05
CLN3-217ENST00000565354 AGTR1P30556 359 aa15.34■□□□□ 0.05
CLN3-217ENST00000565354 UQCRC1P31930 480 aa15.34■□□□□ 0.05
CLN3-217ENST00000565354 IL1RL1Q01638 556 aa15.34■□□□□ 0.05
CLN3-217ENST00000565354 EGR4Q05215 589 aa15.34■□□□□ 0.05
CLN3-217ENST00000565354 TRIM25Q14258 630 aaKnown RBP15.34■□□□□ 0.05
CLN3-217ENST00000565354 MFSD13AQ14CX5 517 aa15.34■□□□□ 0.05
CLN3-217ENST00000565354 MTX3Q5HYI7 312 aa15.34■□□□□ 0.05
CLN3-217ENST00000565354 TMEM225Q6GV28 225 aa15.34■□□□□ 0.05
CLN3-217ENST00000565354 ABLIM2Q6H8Q1 611 aa15.34■□□□□ 0.05
CLN3-217ENST00000565354 BTLAQ7Z6A9 289 aa15.34■□□□□ 0.05
CLN3-217ENST00000565354 BIVMQ86UB2 503 aa15.34■□□□□ 0.05
CLN3-217ENST00000565354 CCDC103Q8IW40 242 aa15.34■□□□□ 0.05
CLN3-217ENST00000565354 TMEM99Q8N816 258 aa15.34■□□□□ 0.05
CLN3-217ENST00000565354 STARD4Q96DR4 205 aa15.34■□□□□ 0.05
CLN3-217ENST00000565354 CLPTM1LQ96KA5 538 aa15.34■□□□□ 0.05
CLN3-217ENST00000565354 PSD2Q9BQI7 771 aa15.34■□□□□ 0.05
CLN3-217ENST00000565354 TRIM15Q9C019 465 aa15.34■□□□□ 0.05
CLN3-217ENST00000565354 RASSF1Q9NS23 344 aa15.34■□□□□ 0.05
CLN3-217ENST00000565354 MED12LQ86YW9 2145 aa15.34■□□□□ 0.05
CLN3-217ENST00000565354 CSPG4Q6UVK1 2322 aa15.33■□□□□ 0.05
CLN3-217ENST00000565354 IGKV1D-42A0A075B6H8 117 aa15.33■□□□□ 0.04
CLN3-217ENST00000565354 MSTNO14793 375 aa15.33■□□□□ 0.04
CLN3-217ENST00000565354 THRBP10828 461 aa15.33■□□□□ 0.04
CLN3-217ENST00000565354 ITGA2P17301 1181 aa15.33■□□□□ 0.04
CLN3-217ENST00000565354 CCDC121Q6ZUS5 278 aa15.33■□□□□ 0.04
CLN3-217ENST00000565354 GPAT4Q86UL3 456 aa15.33■□□□□ 0.04
CLN3-217ENST00000565354 STK32CQ86UX6 486 aa15.33■□□□□ 0.04
CLN3-217ENST00000565354 TSPYL5Q86VY4 417 aaPredicted RBP15.33■□□□□ 0.04
CLN3-217ENST00000565354 TAAR8Q969N4 342 aa15.33■□□□□ 0.04
CLN3-217ENST00000565354 ZNF775Q96BV0 537 aaPredicted RBP15.33■□□□□ 0.04
CLN3-217ENST00000565354 SLC7A6OSQ96CW6 309 aaPredicted RBP15.33■□□□□ 0.04
CLN3-217ENST00000565354 MBD6Q96DN6 1003 aa15.33■□□□□ 0.04
CLN3-217ENST00000565354 ASB9Q96DX5 294 aa15.33■□□□□ 0.04
CLN3-217ENST00000565354 HS6ST2Q96MM7 605 aa15.33■□□□□ 0.04
CLN3-217ENST00000565354 ZNF300Q96RE9 604 aaPredicted RBP15.33■□□□□ 0.04
CLN3-217ENST00000565354 RBM24Q9BX46 236 aaKnown RBP15.33■□□□□ 0.04
CLN3-217ENST00000565354 ASPNQ9BXN1 380 aa15.33■□□□□ 0.04
CLN3-217ENST00000565354 OPN3Q9H1Y3 402 aaPredicted RBP15.33■□□□□ 0.04
CLN3-217ENST00000565354 FANCFQ9NPI8 374 aa15.33■□□□□ 0.04
CLN3-217ENST00000565354 FOXD3Q9UJU5 478 aaPredicted RBP15.33■□□□□ 0.04
CLN3-217ENST00000565354 ENPP4Q9Y6X5 453 aa15.33■□□□□ 0.04
CLN3-217ENST00000565354 AQP7P3A6NL99 342 aa15.32■□□□□ 0.04
CLN3-217ENST00000565354 J3KTA2 159 aa15.32■□□□□ 0.04
CLN3-217ENST00000565354 hCG_2039718K7EN88 272 aa15.32■□□□□ 0.04
CLN3-217ENST00000565354 GPR171O14626 319 aa15.32■□□□□ 0.04
CLN3-217ENST00000565354 THY1P04216 161 aa15.32■□□□□ 0.04
CLN3-217ENST00000565354 CD8BP10966 210 aa15.32■□□□□ 0.04
CLN3-217ENST00000565354 UMPSP11172 480 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms