RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 TBC1D3HP0C7X1 549 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 TMIGD3P0DMS9 266 aaPredicted RBP12.11□□□□□ -0.47
CLN3-210ENST00000563874 PTGS2P35354 604 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 MAP2K6P52564 334 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 TMEM69Q5SWH9 247 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 TBC1D3CQ6IPX1 549 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 TBC1D3Q8IZP1 549 aaPredicted RBP12.11□□□□□ -0.47
CLN3-210ENST00000563874 UXS1Q8NBZ7 420 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 FCAMRQ8WWV6 532 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 TSSK2Q96PF2 358 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 KIR3DX1Q9H7L2 352 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 C12orf4Q9NQ89 552 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 OR6C68A6NDL8 312 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 CTDSPLO15194 276 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 FMO6PO60774 539 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 SIX6O95475 246 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 TGM6O95932 706 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 DPP4P27487 766 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 ACAA2P42765 397 aaKnown RBP12.11□□□□□ -0.47
CLN3-210ENST00000563874 PTH2RP49190 550 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 UBE2MP61081 183 aaKnown RBP12.11□□□□□ -0.47
CLN3-210ENST00000563874 ERVK-25P63136 954 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 HTR4Q13639 388 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 PRICKLE4Q2TBC4 344 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 PRRT3Q5FWE3 981 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 FAM69AQ5T7M9 428 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 METTL11BQ5VVY1 283 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 TANGO2Q6ICL3 276 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 BAIAP2L2Q6UXY1 529 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 SYS1Q8N2H4 156 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 OR52R1Q8NGF1 315 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 RGP1Q92546 391 aaPredicted RBP12.11□□□□□ -0.47
CLN3-210ENST00000563874 RIT1Q92963 219 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 TSACCQ96A04 125 aaPredicted RBP12.11□□□□□ -0.47
CLN3-210ENST00000563874 LINC00052Q96N35 136 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 FKBP7Q9Y680 259 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 CACNA1IQ9P0X4 2223 aa12.11□□□□□ -0.47
CLN3-210ENST00000563874 GABARAPH6UMI1 98 aa12.1□□□□□ -0.47
CLN3-210ENST00000563874 L7N2F9 121 aa12.1□□□□□ -0.47
CLN3-210ENST00000563874 AIPO00170 330 aa12.1□□□□□ -0.47
CLN3-210ENST00000563874 NDUFB2O95178 105 aa12.1□□□□□ -0.47
CLN3-210ENST00000563874 CDK2P24941 298 aa12.1□□□□□ -0.47
CLN3-210ENST00000563874 PSMA6P60900 246 aaKnown RBP12.1□□□□□ -0.47
CLN3-210ENST00000563874 RPS21P63220 83 aaKnown RBP12.1□□□□□ -0.47
CLN3-210ENST00000563874 PLA2G7Q13093 441 aa12.1□□□□□ -0.47
CLN3-210ENST00000563874 IKZF1Q13422 519 aa12.1□□□□□ -0.47
CLN3-210ENST00000563874 KIRREL2Q6UWL6 708 aa12.1□□□□□ -0.47
CLN3-210ENST00000563874 ENPP7Q6UWV6 458 aa12.1□□□□□ -0.47
CLN3-210ENST00000563874 ALKAL2Q6UX46 152 aa12.1□□□□□ -0.47
CLN3-210ENST00000563874 SEZ6L2Q6UXD5 910 aa12.1□□□□□ -0.47
CLN3-210ENST00000563874 ZNF511Q8NB15 262 aa12.1□□□□□ -0.47
CLN3-210ENST00000563874 NT5CQ8TCD5 201 aa12.1□□□□□ -0.47
CLN3-210ENST00000563874 CFHR5Q9BXR6 569 aa12.1□□□□□ -0.47
CLN3-210ENST00000563874 NPDC1Q9NQX5 325 aaPredicted RBP12.1□□□□□ -0.47
CLN3-210ENST00000563874 TAS2R10Q9NYW0 307 aa12.1□□□□□ -0.47
CLN3-210ENST00000563874 OR5V1Q9UGF6 321 aa12.1□□□□□ -0.47
CLN3-210ENST00000563874 BAIAP2Q9UQB8 552 aa12.1□□□□□ -0.47
CLN3-210ENST00000563874 MYO15AQ9UKN7 3530 aa12.1□□□□□ -0.47
CLN3-210ENST00000563874 A0A1B0GTH9 108 aa12.1□□□□□ -0.47
CLN3-210ENST00000563874 PRSS38A1L453 326 aa12.1□□□□□ -0.47
CLN3-210ENST00000563874 IGKV1D-16P01601 117 aa12.1□□□□□ -0.47
CLN3-210ENST00000563874 SMIM10L1P0DMW3 83 aa12.1□□□□□ -0.47
CLN3-210ENST00000563874 ACTR1BP42025 376 aa12.1□□□□□ -0.47
CLN3-210ENST00000563874 KIAA1024LP59773 190 aa12.1□□□□□ -0.47
CLN3-210ENST00000563874 ACTR1AP61163 376 aa12.1□□□□□ -0.47
CLN3-210ENST00000563874 ODF4Q2M2E3 257 aa12.1□□□□□ -0.47
CLN3-210ENST00000563874 SMIM10Q96HG1 83 aa12.1□□□□□ -0.47
CLN3-210ENST00000563874 PAWRQ96IZ0 340 aaKnown RBP12.1□□□□□ -0.47
CLN3-210ENST00000563874 CXorf58Q96LI9 332 aa12.1□□□□□ -0.47
CLN3-210ENST00000563874 NANSQ9NR45 359 aa12.1□□□□□ -0.47
CLN3-210ENST00000563874 DNAJB12Q9NXW2 375 aaKnown RBP12.1□□□□□ -0.47
CLN3-210ENST00000563874 SERTAD3Q9UJW9 196 aa12.1□□□□□ -0.47
CLN3-210ENST00000563874 ICAM5Q9UMF0 924 aa12.1□□□□□ -0.47
CLN3-210ENST00000563874 A0A1B0GUH1 482 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 PRKACAP17612 351 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 SPI1P17947 270 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 P2RX1P51575 399 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 PPP2CBP62714 309 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 PPP2CAP67775 309 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 FCRL6Q6DN72 434 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 FIGLAQ6QHK4 219 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 C3P1Q6ZMU1 363 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 POMGNT2Q8NAT1 580 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 OR8K3Q8NH51 312 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 OR14A16Q8NHC5 309 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 COQ8AQ8NI60 647 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 OR1E3Q8WZA6 343 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 TM4SF19Q96DZ7 209 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 S100A16Q96FQ6 103 aaKnown RBP12.09□□□□□ -0.47
CLN3-210ENST00000563874 RADILQ96JH8 1075 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 OR2M4Q96R27 311 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 OR1F2PQ96R84 312 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 V9GY05 133 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 SPEGQ15772 3267 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 ARID1BQ8NFD5 2236 aaPredicted RBP12.09□□□□□ -0.47
CLN3-210ENST00000563874 OR6C74A6NCV1 312 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 H0YGG7 62 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 HRKO00198 91 aa12.09□□□□□ -0.47
CLN3-210ENST00000563874 PRKNO60260 465 aaPredicted RBP12.09□□□□□ -0.47
CLN3-210ENST00000563874 GPR75O95800 540 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms