RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 SYT9Q86SS6 491 aa14.95□□□□□ -0.02
SHMT2-232ENST00000557487 IZUMO1Q8IYV9 350 aa14.95□□□□□ -0.02
SHMT2-232ENST00000557487 MOSPD2Q8NHP6 518 aa14.95□□□□□ -0.02
SHMT2-232ENST00000557487 GRHL3Q8TE85 626 aa14.95□□□□□ -0.02
SHMT2-232ENST00000557487 SCARB1Q8WTV0 552 aa14.95□□□□□ -0.02
SHMT2-232ENST00000557487 CNOT9Q92600 299 aaKnown RBP14.95□□□□□ -0.02
SHMT2-232ENST00000557487 RSC1A1Q92681 617 aa14.95□□□□□ -0.02
SHMT2-232ENST00000557487 MIB2Q96AX9 1013 aa14.95□□□□□ -0.02
SHMT2-232ENST00000557487 REG4Q9BYZ8 158 aa14.95□□□□□ -0.02
SHMT2-232ENST00000557487 BEX1Q9HBH7 125 aa14.95□□□□□ -0.02
SHMT2-232ENST00000557487 TAS2R8Q9NYW2 309 aa14.95□□□□□ -0.02
SHMT2-232ENST00000557487 FLRT3Q9NZU0 649 aa14.95□□□□□ -0.02
SHMT2-232ENST00000557487 USP36Q9P275 1121 aaKnown RBP14.95□□□□□ -0.02
SHMT2-232ENST00000557487 PFDN2Q9UHV9 154 aa14.95□□□□□ -0.02
SHMT2-232ENST00000557487 PIN1P1O15428 100 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 LATO43561 262 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 GPR75O95800 540 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 PAK4O96013 591 aaPredicted RBP14.94□□□□□ -0.02
SHMT2-232ENST00000557487 TACSTD2P09758 323 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 NAGAP17050 411 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 NUP62P37198 522 aaPredicted RBP14.94□□□□□ -0.02
SHMT2-232ENST00000557487 RAD52P43351 418 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 P2RX1P51575 399 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 DEFB134Q4QY38 66 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 ALG10BQ5I7T1 473 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 RGS7BPQ6MZT1 257 aaPredicted RBP14.94□□□□□ -0.02
SHMT2-232ENST00000557487 PWWP2BQ6NUJ5 590 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 FBXO42Q6P3S6 717 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 FCRLAQ7L513 359 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 OR4N5Q8IXE1 308 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 RFLNBQ8N5W9 214 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 DNAAF1Q8NEP3 725 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 SDR9C7Q8NEX9 313 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 OR4K13Q8NH42 304 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 MAFAQ8NHW3 353 aaPredicted RBP14.94□□□□□ -0.02
SHMT2-232ENST00000557487 C1orf216Q8TAB5 229 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 POF1BQ8WVV4 589 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 ZNF707Q96C28 371 aaPredicted RBP14.94□□□□□ -0.02
SHMT2-232ENST00000557487 SGTBQ96EQ0 304 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 OR2A5Q96R48 311 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 ST6GALNAC1Q9NSC7 600 aaPredicted RBP14.94□□□□□ -0.02
SHMT2-232ENST00000557487 ZNF69Q9UC07 566 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 CHD9Q3L8U1 2897 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 TRPM6Q9BX84 2022 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 LAMA2P24043 3122 aaKnown RBP14.94□□□□□ -0.02
SHMT2-232ENST00000557487 RP2O75695 350 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 ZNF432O94892 652 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 HIST1H2ABP04908 130 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 CXCL2P19875 107 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 GABRA3P34903 492 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 FGL2Q14314 439 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 PRICKLE4Q2TBC4 344 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 HES5Q5TA89 166 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 PXDC1Q5TGL8 231 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 ZC3H14Q6PJT7 736 aaKnown RBP14.94□□□□□ -0.02
SHMT2-232ENST00000557487 HIST3H2AQ7L7L0 130 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 CHMP1BQ7LBR1 199 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 IQCF2Q8IXL9 164 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 OR4E2Q8NGC2 313 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 SYNPRQ8TBG9 265 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 SMAP2Q8WU79 429 aaPredicted RBP14.94□□□□□ -0.02
SHMT2-232ENST00000557487 HIST1H2ACQ93077 130 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 GFI1Q99684 422 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 PDCD1LG2Q9BQ51 273 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 CHIAQ9BZP6 476 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 NMNAT2Q9BZQ4 307 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 TWSG1Q9GZX9 223 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 OBP2AQ9NY56 170 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 PLEKHM1Q9Y4G2 1056 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 KCNMB2Q9Y691 235 aa14.94□□□□□ -0.02
SHMT2-232ENST00000557487 LRRC72A6NJI9 287 aa14.93□□□□□ -0.02
SHMT2-232ENST00000557487 ADRB1P08588 477 aa14.93□□□□□ -0.02
SHMT2-232ENST00000557487 PPP3CBP16298 524 aa14.93□□□□□ -0.02
SHMT2-232ENST00000557487 S100A11P31949 105 aa14.93□□□□□ -0.02
SHMT2-232ENST00000557487 ACAA2P42765 397 aaKnown RBP14.93□□□□□ -0.02
SHMT2-232ENST00000557487 SEC61A1P61619 476 aaKnown RBP14.93□□□□□ -0.02
SHMT2-232ENST00000557487 PLAURQ03405 335 aa14.93□□□□□ -0.02
SHMT2-232ENST00000557487 MPPED2Q15777 294 aa14.93□□□□□ -0.02
SHMT2-232ENST00000557487 MANEAQ5SRI9 462 aa14.93□□□□□ -0.02
SHMT2-232ENST00000557487 FIGNL1Q6PIW4 674 aa14.93□□□□□ -0.02
SHMT2-232ENST00000557487 KANSL1Q7Z3B3 1105 aa14.93□□□□□ -0.02
SHMT2-232ENST00000557487 PNPLA2Q96AD5 504 aa14.93□□□□□ -0.02
SHMT2-232ENST00000557487 CTHRC1Q96CG8 243 aa14.93□□□□□ -0.02
SHMT2-232ENST00000557487 CCNL2Q96S94 520 aaPredicted RBP14.93□□□□□ -0.02
SHMT2-232ENST00000557487 SEC22CQ9BRL7 303 aa14.93□□□□□ -0.02
SHMT2-232ENST00000557487 IL21RQ9HBE5 538 aa14.93□□□□□ -0.02
SHMT2-232ENST00000557487 FBXO34Q9NWN3 711 aa14.93□□□□□ -0.02
SHMT2-232ENST00000557487 ANKRD10Q9NXR5 420 aa14.93□□□□□ -0.02
SHMT2-232ENST00000557487 MED11Q9P086 117 aa14.93□□□□□ -0.02
SHMT2-232ENST00000557487 IER3IP1Q9Y5U9 82 aa14.93□□□□□ -0.02
SHMT2-232ENST00000557487 NPIPA5A0A0B4J1W7 369 aa14.92□□□□□ -0.02
SHMT2-232ENST00000557487 A0A1B0GW55 424 aa14.92□□□□□ -0.02
SHMT2-232ENST00000557487 OTOL1A6NHN0 477 aaPredicted RBP14.92□□□□□ -0.02
SHMT2-232ENST00000557487 NPIPA7E9PJI5 369 aa14.92□□□□□ -0.02
SHMT2-232ENST00000557487 CTNSO60931 367 aa14.92□□□□□ -0.02
SHMT2-232ENST00000557487 GLCEO94923 617 aa14.92□□□□□ -0.02
SHMT2-232ENST00000557487 DUX4L2P0CJ85 424 aa14.92□□□□□ -0.02
SHMT2-232ENST00000557487 DUX4L3P0CJ86 424 aa14.92□□□□□ -0.02
SHMT2-232ENST00000557487 DUX4L4P0CJ87 422 aa14.92□□□□□ -0.02
SHMT2-232ENST00000557487 DUX4L5P0CJ88 424 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms