RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 PARP8Q8N3A8 854 aa11.22□□□□□ -0.61
SHMT2-230ENST00000557427 WDSUB1Q8N9V3 476 aa11.22□□□□□ -0.61
SHMT2-230ENST00000557427 TRNT1Q96Q11 434 aaKnown RBP11.22□□□□□ -0.61
SHMT2-230ENST00000557427 HS3ST6Q96QI5 342 aa11.22□□□□□ -0.61
SHMT2-230ENST00000557427 FEVQ99581 238 aa11.22□□□□□ -0.61
SHMT2-230ENST00000557427 TIMP4Q99727 224 aa11.22□□□□□ -0.61
SHMT2-230ENST00000557427 RBM24Q9BX46 236 aaKnown RBP11.22□□□□□ -0.61
SHMT2-230ENST00000557427 PINK1Q9BXM7 581 aa11.22□□□□□ -0.61
SHMT2-230ENST00000557427 EQTNQ9NQ60 294 aa11.22□□□□□ -0.61
SHMT2-230ENST00000557427 YAE1D1Q9NRH1 226 aa11.22□□□□□ -0.61
SHMT2-230ENST00000557427 DSPPQ9NZW4 1301 aa11.22□□□□□ -0.61
SHMT2-230ENST00000557427 RSL24D1Q9UHA3 163 aaKnown RBP11.22□□□□□ -0.61
SHMT2-230ENST00000557427 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.21□□□□□ -0.612e-7■■■■■ 43.2
SHMT2-230ENST00000557427 FREM3P0C091 2139 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 HEATR5AQ86XA9 2040 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 CCDC160A6NGH7 325 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 H3BSA7 217 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 FAAHO00519 579 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 SNPHO15079 494 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 CBR3O75828 277 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 ANGPTL1O95841 491 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 CHRM4P08173 479 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 CYP4B1P13584 511 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 PAX1P15863 534 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 EEF1B2P24534 225 aaKnown RBP11.21□□□□□ -0.61
SHMT2-230ENST00000557427 PNLIPRP2P54317 469 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 TEKQ02763 1124 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 CRYZQ08257 329 aaKnown RBP11.21□□□□□ -0.61
SHMT2-230ENST00000557427 FOXF2Q12947 444 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 SNTA1Q13424 505 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 MAD2L1BPQ15013 274 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-230ENST00000557427 ZNHIT3Q15649 155 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-230ENST00000557427 CHRFAM7AQ494W8 412 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 CYP27C1Q4G0S4 372 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 EXOSC6Q5RKV6 272 aaKnown RBP11.21□□□□□ -0.61
SHMT2-230ENST00000557427 NSUN5P2Q63ZY6 315 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 MFSD12Q6NUT3 480 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 KCTD8Q6ZWB6 473 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 OR2L13Q8N349 312 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 FAM83FQ8NEG4 500 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-230ENST00000557427 ABTB1Q969K4 478 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-230ENST00000557427 TMIGD2Q96BF3 282 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 NTNG2Q96CW9 530 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 SLC35A4Q96G79 324 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 C16orf58Q96GQ5 468 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 RSPO3Q9BXY4 272 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-230ENST00000557427 UBQLN3Q9H347 655 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 ZNF556Q9HAH1 456 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 FLRT3Q9NZU0 649 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 TMCC3Q9ULS5 477 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 CAMK2AQ9UQM7 478 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 SLC9A8Q9Y2E8 581 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 TPRKBQ9Y3C4 175 aa11.21□□□□□ -0.61
SHMT2-230ENST00000557427 DOCK7Q96N67 2140 aa11.21□□□□□ -0.62
SHMT2-230ENST00000557427 GXYLT2A0PJZ3 443 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 MBD3L3A6NE82 208 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-230ENST00000557427 C17orf51A8MQB3 221 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 FFAR1O14842 300 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 CASKO14936 926 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 TLX2O43763 284 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-230ENST00000557427 SCO2O43819 266 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 CD5LO43866 347 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 LGI1O95970 557 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 ADAP00813 363 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 H1F0P07305 194 aaKnown RBP11.2□□□□□ -0.62
SHMT2-230ENST00000557427 LOXP28300 417 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-230ENST00000557427 OPRM1P35372 400 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 GGT2P36268 569 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 CSNK2BP67870 215 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 SRYQ05066 204 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 GANABQ14697 944 aaKnown RBP11.2□□□□□ -0.62
SHMT2-230ENST00000557427 DECR1Q16698 335 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 GPAT3Q53EU6 434 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 VASNQ6EMK4 673 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 ZNF770Q6IQ21 691 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-230ENST00000557427 TMEM81Q6P7N7 255 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 ZCCHC12Q6PEW1 402 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 DHRS4L2Q6PKH6 230 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 LUZP2Q86TE4 346 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 PLCZ1Q86YW0 608 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 SPARTQ8N0X7 666 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 LINC00471Q8N535 108 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 MEIOBQ8N635 442 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 OR52J3Q8NH60 311 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 OR14L1PQ8NHC6 308 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 MBD3L2Q8NHZ7 208 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-230ENST00000557427 ZNF420Q8TAQ5 688 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-230ENST00000557427 GPR151Q8TDV0 419 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 ADAMTS15Q8TE58 950 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 ZFAND2BQ8WV99 257 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 PIK3R3Q92569 461 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 SLC9A6Q92581 669 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 FUZQ9BT04 418 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 SLC38A1Q9H2H9 487 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 DUSP21Q9H596 190 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 Q9N2J8 555 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 CCNB1IP1Q9NPC3 277 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 ZNF701Q9NV72 531 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-230ENST00000557427 RLIMQ9NVW2 624 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 SCN3BQ9NY72 215 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms