RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 RBMY1BA6NDE4 496 aaKnown RBP2.91□□□□□ -1.94
VPS29-205ENST00000548539 RBMY1EA6NEQ0 496 aaKnown RBP2.91□□□□□ -1.94
VPS29-205ENST00000548539 FAM47DPA6NHR8 397 aa2.91□□□□□ -1.94
VPS29-205ENST00000548539 AP3B1O00203 1094 aa2.91□□□□□ -1.94
VPS29-205ENST00000548539 SUPT7LO94864 414 aa2.91□□□□□ -1.94
VPS29-205ENST00000548539 SNAPINO95295 136 aa2.91□□□□□ -1.94
VPS29-205ENST00000548539 P04436 131 aa2.91□□□□□ -1.94
VPS29-205ENST00000548539 RBMY1DP0C7P1 496 aaKnown RBP2.91□□□□□ -1.94
VPS29-205ENST00000548539 RBMY1A1P0DJD3 496 aaKnown RBP2.91□□□□□ -1.94
VPS29-205ENST00000548539 HNRNPH3P31942 346 aaKnown RBP2.91□□□□□ -1.94
VPS29-205ENST00000548539 EPS15P42566 896 aa2.91□□□□□ -1.94
VPS29-205ENST00000548539 LRRC74AQ0VAA2 488 aa2.91□□□□□ -1.94
VPS29-205ENST00000548539 GK3PQ14409 553 aa2.91□□□□□ -1.94
VPS29-205ENST00000548539 ZNF79Q15937 498 aa2.91□□□□□ -1.94
VPS29-205ENST00000548539 C6orf226Q5I0X4 101 aa2.91□□□□□ -1.94
VPS29-205ENST00000548539 MARCH8Q5T0T0 291 aa2.91□□□□□ -1.94
VPS29-205ENST00000548539 PRAMEF5Q5TYX0 476 aa2.91□□□□□ -1.94
VPS29-205ENST00000548539 PRAMEF6Q5VXH4 476 aa2.91□□□□□ -1.94
VPS29-205ENST00000548539 LRRC31Q6UY01 552 aa2.91□□□□□ -1.94
VPS29-205ENST00000548539 ZYG11AQ6WRX3 759 aa2.91□□□□□ -1.94
VPS29-205ENST00000548539 GDPD3Q7L5L3 318 aa2.91□□□□□ -1.94
VPS29-205ENST00000548539 H2BFWTQ7Z2G1 175 aa2.91□□□□□ -1.94
VPS29-205ENST00000548539 NANOGNBQ7Z5D8 188 aa2.91□□□□□ -1.94
VPS29-205ENST00000548539 FAM228AQ86W67 206 aa2.91□□□□□ -1.94
VPS29-205ENST00000548539 ERI1Q8IV48 349 aaKnown RBP2.91□□□□□ -1.94
VPS29-205ENST00000548539 NUDCD3Q8IVD9 361 aa2.91□□□□□ -1.94
VPS29-205ENST00000548539 NECAB1Q8N987 351 aa2.91□□□□□ -1.94
VPS29-205ENST00000548539 OR9G1Q8NH87 305 aa2.91□□□□□ -1.94
VPS29-205ENST00000548539 FANK1Q8TC84 345 aa2.91□□□□□ -1.94
VPS29-205ENST00000548539 ZDHHC11Q9H8X9 412 aa2.91□□□□□ -1.94
VPS29-205ENST00000548539 NAP1L2Q9ULW6 460 aaPredicted RBP2.91□□□□□ -1.94
VPS29-205ENST00000548539 MMP17Q9ULZ9 603 aa2.91□□□□□ -1.94
VPS29-205ENST00000548539 KIR2DL5BA0A0G2JN68 375 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 KIR2DL5BA0A0G2JPC4 375 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 OR5B21A6NL26 309 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 LOC110117498-PIK3R3F6TDL0 507 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 H0Y8G0 127 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 ABCD4O14678 606 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 ACTL6AO96019 429 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 MMP1P03956 469 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 FUT3P21217 361 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 GABRR1P24046 479 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 COX7A1P24310 79 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 CD1BP29016 333 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 IL12AP29459 219 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 GDI1P31150 447 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 OPRD1P41143 372 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 SSR1P43307 286 aaKnown RBP2.9□□□□□ -1.95
VPS29-205ENST00000548539 VDAC2P45880 294 aaPredicted RBP2.9□□□□□ -1.95
VPS29-205ENST00000548539 TIMM10P62072 90 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 SCRN3Q0VDG4 424 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 MRPL28Q13084 256 aaKnown RBP2.9□□□□□ -1.95
VPS29-205ENST00000548539 ARFRP1Q13795 201 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 ZNF630Q2M218 657 aaPredicted RBP2.9□□□□□ -1.95
VPS29-205ENST00000548539 PAGE3Q5JUK9 113 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 EOGTQ5NDL2 527 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 C1orf100Q5SVJ3 147 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 TMIGD1Q6UXZ0 262 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 KDM7AQ6ZMT4 941 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 RUFY3Q7L099 469 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 EGFL6Q8IUX8 553 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 PRR22Q8IZ63 422 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 KIR2DL5AQ8N109 375 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 OR9K2Q8NGE7 335 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 KIR2DL5BQ8NHK3 375 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 LINC01006Q8NI28 216 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 FAM151AQ8WW52 585 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 NUS1Q96E22 293 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 PHYHIPLQ96FC7 376 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 TPD52L3Q96J77 140 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 PLEKHA8Q96JA3 519 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 HIST1H4GQ99525 98 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 SELENOIQ9C0D9 397 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 ANKRD19PQ9H560 264 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 SH2D2AQ9NP31 389 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 NMRK1Q9NWW6 199 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 KCNIP1Q9NZI2 227 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 PISDQ9UG56 409 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 ASF1AQ9Y294 204 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 KIF25-AS1Q9Y6Z4 181 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 THSD7BQ9C0I4 1608 aa2.9□□□□□ -1.95
VPS29-205ENST00000548539 KANK1Q14678 1352 aa2.89□□□□□ -1.95
VPS29-205ENST00000548539 A0A0G2JLM5 398 aa2.89□□□□□ -1.95
VPS29-205ENST00000548539 RTL8CO15255 209 aa2.89□□□□□ -1.95
VPS29-205ENST00000548539 EMC8O43402 210 aa2.89□□□□□ -1.95
VPS29-205ENST00000548539 HCRTR1O43613 425 aa2.89□□□□□ -1.95
VPS29-205ENST00000548539 SLC2A3P11169 496 aa2.89□□□□□ -1.95
VPS29-205ENST00000548539 CASP14P31944 242 aa2.89□□□□□ -1.95
VPS29-205ENST00000548539 GYG1P46976 350 aa2.89□□□□□ -1.95
VPS29-205ENST00000548539 KPNA2P52292 529 aaKnown RBP2.89□□□□□ -1.95
VPS29-205ENST00000548539 PRPS1P60891 318 aa2.89□□□□□ -1.95
VPS29-205ENST00000548539 TLE4Q04727 773 aa2.89□□□□□ -1.95
VPS29-205ENST00000548539 ENPEPQ07075 957 aa2.89□□□□□ -1.95
VPS29-205ENST00000548539 ZNF763Q0D2J5 394 aa2.89□□□□□ -1.95
VPS29-205ENST00000548539 NSDHLQ15738 373 aa2.89□□□□□ -1.95
VPS29-205ENST00000548539 RSBN1Q5VWQ0 802 aaPredicted RBP2.89□□□□□ -1.95
VPS29-205ENST00000548539 C11orf71Q6IPW1 123 aa2.89□□□□□ -1.95
VPS29-205ENST00000548539 IL34Q6ZMJ4 242 aa2.89□□□□□ -1.95
VPS29-205ENST00000548539 PRSS41Q7RTY9 318 aa2.89□□□□□ -1.95
VPS29-205ENST00000548539 ZNF546Q86UE3 836 aa2.89□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms