RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 IL10RAQ13651 578 aa7.66□□□□□ -1.18
VPS29-203ENST00000546588 SPCS2Q15005 226 aa7.66□□□□□ -1.18
VPS29-203ENST00000546588 CD226Q15762 336 aa7.66□□□□□ -1.18
VPS29-203ENST00000546588 NNATQ16517 81 aa7.66□□□□□ -1.18
VPS29-203ENST00000546588 DCST1Q5T197 706 aa7.66□□□□□ -1.18
VPS29-203ENST00000546588 OTUD3Q5T2D3 398 aaPredicted RBP7.66□□□□□ -1.18
VPS29-203ENST00000546588 ZNF691Q5VV52 312 aa7.66□□□□□ -1.18
VPS29-203ENST00000546588 CD276Q5ZPR3 534 aa7.66□□□□□ -1.18
VPS29-203ENST00000546588 DEF8Q6ZN54 512 aa7.66□□□□□ -1.18
VPS29-203ENST00000546588 MBOAT2Q6ZWT7 520 aa7.66□□□□□ -1.18
VPS29-203ENST00000546588 GDF7Q7Z4P5 450 aa7.66□□□□□ -1.18
VPS29-203ENST00000546588 RAB43Q86YS6 212 aa7.66□□□□□ -1.18
VPS29-203ENST00000546588 GPALPP1Q8IXQ4 340 aa7.66□□□□□ -1.18
VPS29-203ENST00000546588 GALNT4Q8N4A0 578 aa7.66□□□□□ -1.18
VPS29-203ENST00000546588 DHRSXQ8N5I4 330 aa7.66□□□□□ -1.18
VPS29-203ENST00000546588 SLC5A8Q8N695 610 aa7.66□□□□□ -1.18
VPS29-203ENST00000546588 OR4K5Q8NGD3 323 aa7.66□□□□□ -1.18
VPS29-203ENST00000546588 VANGL1Q8TAA9 524 aaPredicted RBP7.66□□□□□ -1.18
VPS29-203ENST00000546588 DNAJA4Q8WW22 397 aaPredicted RBP7.66□□□□□ -1.18
VPS29-203ENST00000546588 LIPHQ8WWY8 451 aa7.66□□□□□ -1.18
VPS29-203ENST00000546588 CNOT9Q92600 299 aaKnown RBP7.66□□□□□ -1.18
VPS29-203ENST00000546588 SLC38A4Q969I6 547 aa7.66□□□□□ -1.18
VPS29-203ENST00000546588 ZNF566Q969W8 418 aa7.66□□□□□ -1.18
VPS29-203ENST00000546588 C8orf44Q96CB5 159 aa7.66□□□□□ -1.18
VPS29-203ENST00000546588 SLC41A3Q96GZ6 507 aa7.66□□□□□ -1.18
VPS29-203ENST00000546588 GAL3ST4Q96RP7 486 aa7.66□□□□□ -1.18
VPS29-203ENST00000546588 RASL10BQ96S79 203 aa7.66□□□□□ -1.18
VPS29-203ENST00000546588 MCHR1Q99705 422 aa7.66□□□□□ -1.18
VPS29-203ENST00000546588 NIPSNAP1Q9BPW8 284 aa7.66□□□□□ -1.18
VPS29-203ENST00000546588 FNDC11Q9BVV2 318 aa7.66□□□□□ -1.18
VPS29-203ENST00000546588 TRIM2Q9C040 744 aa7.66□□□□□ -1.18
VPS29-203ENST00000546588 FAM118AQ9NWS6 357 aa7.66□□□□□ -1.18
VPS29-203ENST00000546588 SLC13A4Q9UKG4 626 aa7.66□□□□□ -1.18
VPS29-203ENST00000546588 WASF3Q9UPY6 502 aa7.66□□□□□ -1.18
VPS29-203ENST00000546588 YARS2Q9Y2Z4 477 aaKnown RBP7.66□□□□□ -1.18
VPS29-203ENST00000546588 CHTOPQ9Y3Y2 248 aaKnown RBP7.66□□□□□ -1.18
VPS29-203ENST00000546588 CHCHD2Q9Y6H1 151 aaPredicted RBP7.66□□□□□ -1.18
VPS29-203ENST00000546588 FREM2Q5SZK8 3169 aa7.66□□□□□ -1.18
VPS29-203ENST00000546588 A0A087WUJ7 227 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 NPIPA5A0A0B4J1W7 369 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 LOC101059948A0A1B0GTJ6 334 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 ZAR1LA6NP61 321 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 NPIPA7E9PJI5 369 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 H3BML4 177 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 H3BNH8 94 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 TXNL1O43396 289 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 FRS3O43559 492 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 HS6ST1O60243 411 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 CDC40O60508 579 aaKnown RBP eCLIP7.65□□□□□ -1.18
VPS29-203ENST00000546588 TUSC2O75896 110 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 OR6B1O95007 311 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 GOSR1O95249 250 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 NTN1O95631 604 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 CSTAP01040 98 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 HPXP02790 462 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 SERPINA7P05543 415 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 CELA3BP08861 270 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 NPIPA8P0DM63 369 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 IFNA8P32881 189 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 IDUAP35475 653 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 DLSTP36957 453 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 NOVA1P51513 510 aaKnown RBP7.65□□□□□ -1.18
VPS29-203ENST00000546588 MAP2K6P52564 334 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 MLF1P58340 268 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 TAS2R41P59536 307 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 CXCR4P61073 352 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 ISL1P61371 349 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 CSNK2BP67870 215 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 ZNF117Q03924 483 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 PRKCDQ05655 676 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 Q0VFX4 171 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 NPRL3Q12980 569 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 TSPAN31Q12999 210 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 GANABQ14697 944 aaKnown RBP7.65□□□□□ -1.18
VPS29-203ENST00000546588 OR1Q1Q15612 314 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 BTBD16Q32M84 506 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 KRTAP19-4Q3LI73 84 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 KCTD21Q4G0X4 260 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 SLC25A53Q5H9E4 307 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 C6orf52Q5T4I8 152 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 ARHGAP11AQ6P4F7 1023 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 PODNL1Q6PEZ8 512 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 ULK3Q6PHR2 472 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 KLHL17Q6TDP4 642 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 OPN5Q6U736 354 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 WDR88Q6ZMY6 472 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 TMPRSS11FQ6ZWK6 438 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 LYSMD2Q8IV50 215 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 OR9Q2Q8NGE9 314 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 GRHL3Q8TE85 626 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 PAQR8Q8TEZ7 354 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 PSMF1Q92530 271 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 FGF11Q92914 225 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 C3orf49Q96BT1 292 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 TMCO6Q96DC7 493 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 SPACA9Q96E40 222 aaPredicted RBP7.65□□□□□ -1.18
VPS29-203ENST00000546588 DCHS1Q96JQ0 3298 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 CEP19Q96LK0 163 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 ADOQ96SZ5 270 aa7.65□□□□□ -1.18
VPS29-203ENST00000546588 TMEM43Q9BTV4 400 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms