RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 SLC6A13Q9NSD5 602 aa7.41□□□□□ -1.22
USP28-215ENST00000545608 RLIMQ9NVW2 624 aa7.41□□□□□ -1.22
USP28-215ENST00000545608 PARPBPQ9NWS1 579 aa7.41□□□□□ -1.22
USP28-215ENST00000545608 SLC9A8Q9Y2E8 581 aa7.41□□□□□ -1.22
USP28-215ENST00000545608 GPR45Q9Y5Y3 372 aa7.41□□□□□ -1.22
USP28-215ENST00000545608 CR1P17927 2039 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 LIPT2A6NK58 231 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 LY6HO94772 140 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 AKR7A3O95154 331 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 DBIP07108 87 aaKnown RBP7.4□□□□□ -1.22
USP28-215ENST00000545608 VSIG8P0DPA2 414 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 EPHA3P29320 983 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 MPGP29372 298 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 ACAA2P42765 397 aaKnown RBP7.4□□□□□ -1.22
USP28-215ENST00000545608 ANXA11P50995 505 aaKnown RBP7.4□□□□□ -1.22
USP28-215ENST00000545608 MVDP53602 400 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 DSCR9P59020 149 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 LOXL1Q08397 574 aaPredicted RBP7.4□□□□□ -1.22
USP28-215ENST00000545608 BNIP2Q12982 314 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 GNA13Q14344 377 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 OR7A5Q15622 319 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 GSTA3Q16772 222 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 MST1LQ2TV78 715 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 TMEM249Q2WGJ8 235 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 CEP85LQ5SZL2 805 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 OTUD3Q5T2D3 398 aaPredicted RBP7.4□□□□□ -1.22
USP28-215ENST00000545608 ZNF544Q6NX49 715 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 PODNL1Q6PEZ8 512 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 CLEC2AQ6UVW9 174 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 ZNF836Q6ZNA1 936 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 AAED1Q7RTV5 226 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 SPATA19Q7Z5L4 167 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 PEX5LQ8IYB4 626 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 KIRREL3Q8IZU9 778 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 C17orf78Q8N4C9 275 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 TRIML2Q8N7C3 387 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 C1orf162Q8NEQ5 155 aaPredicted RBP7.4□□□□□ -1.22
USP28-215ENST00000545608 OR9K2Q8NGE7 335 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 OR52P1PQ8NH57 321 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 TMEM45BQ96B21 275 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 TNFRSF13CQ96RJ3 184 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 PAIP2Q9BPZ3 127 aaKnown RBP7.4□□□□□ -1.22
USP28-215ENST00000545608 CENPHQ9H3R5 247 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 AMDHD2Q9Y303 409 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 CHST2Q9Y4C5 530 aa7.4□□□□□ -1.22
USP28-215ENST00000545608 ANK3Q12955 4377 aaKnown RBP7.4□□□□□ -1.22
USP28-215ENST00000545608 CHD3Q12873 2000 aaKnown RBP7.4□□□□□ -1.23
USP28-215ENST00000545608 PLCE1Q9P212 2302 aa7.4□□□□□ -1.23
USP28-215ENST00000545608 ATRQ13535 2644 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 CDHR4A6H8M9 788 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 AQP7P3A6NL99 342 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 RNF212BA8MTL3 300 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 ATP6V1G2-DDX39BF2Z307 99 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 H7C417 338 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 M0R082 166 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 RFXANKO14593 260 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 KLF11O14901 512 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 KRT75O95678 551 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 GPIP06744 558 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 KITP10721 976 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 PRG2P13727 222 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 ETFAP13804 333 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 CDH2P19022 906 aaPredicted RBP7.39□□□□□ -1.23
USP28-215ENST00000545608 CXCR1P25024 350 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 APOBEC3AP31941 199 aaPredicted RBP7.39□□□□□ -1.23
USP28-215ENST00000545608 P2RY4P51582 365 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 MAP2K6P52564 334 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 PRPS1P60891 318 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 TXNL4AP83876 142 aaKnown RBP7.39□□□□□ -1.23
USP28-215ENST00000545608 TGFBR3Q03167 851 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 LGALS3BPQ08380 585 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 CHRFAM7AQ494W8 412 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 GTDC1Q4AE62 458 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 HIKESHIQ53FT3 197 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 C6orf52Q5T4I8 152 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 PHC2Q8IXK0 858 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 ZNF440Q8IYI8 595 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 CLIP4Q8N3C7 705 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 CADM2Q8N3J6 435 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 FAM169BQ8N8A8 192 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 ANKRD42Q8N9B4 389 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 ZNF417Q8TAU3 575 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 C10orf105Q8TEF2 133 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 EDARADDQ8WWZ3 215 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 AURKBQ96GD4 344 aaPredicted RBP7.39□□□□□ -1.23
USP28-215ENST00000545608 ZNF587Q96SQ5 575 aaPredicted RBP7.39□□□□□ -1.23
USP28-215ENST00000545608 ZBTB18Q99592 522 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 SF3B5Q9BWJ5 86 aaKnown RBP7.39□□□□□ -1.23
USP28-215ENST00000545608 MANSC1Q9H8J5 431 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 VIPAS39Q9H9C1 493 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 FKRPQ9H9S5 495 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 MOKQ9UQ07 419 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 COL6A5A8TX70 2615 aa7.39□□□□□ -1.23
USP28-215ENST00000545608 DSPPQ9NZW4 1301 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 HDAC3O15379 428 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 NPIPB7O75200 414 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 SNNO75324 88 aaPredicted RBP7.38□□□□□ -1.23
USP28-215ENST00000545608 LGI1O95970 557 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 IFNA2P01563 188 aa7.38□□□□□ -1.23
USP28-215ENST00000545608 BCHEP06276 602 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms