RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	SCP2D1	Q9UJQ7	156 aa		13.78	□□□□□ -0.2
CHFR-223	ENST00000544268	PILRB	Q9UKJ0	227 aa		13.78	□□□□□ -0.2
CHFR-223	ENST00000544268	DAPP1	Q9UN19	280 aa		13.78	□□□□□ -0.2
CHFR-223	ENST00000544268	TNRC6B	Q9UPQ9	1833 aa	Known RBP	13.77	□□□□□ -0.2
CHFR-223	ENST00000544268	TTC28	Q96AY4	2481 aa		13.77	□□□□□ -0.21
CHFR-223	ENST00000544268		A0A1B0GVC2	190 aa		13.77	□□□□□ -0.21
CHFR-223	ENST00000544268		A6NIN4	97 aa		13.77	□□□□□ -0.21
CHFR-223	ENST00000544268		M0R296	226 aa		13.77	□□□□□ -0.21
CHFR-223	ENST00000544268	GIMD1	P0DJR0	217 aa		13.77	□□□□□ -0.21
CHFR-223	ENST00000544268	PPM1F	P49593	454 aa	Predicted RBP	13.77	□□□□□ -0.21
CHFR-223	ENST00000544268	ARFIP1	P53367	373 aa		13.77	□□□□□ -0.21
CHFR-223	ENST00000544268	SST	P61278	116 aa		13.77	□□□□□ -0.21
CHFR-223	ENST00000544268	PGGHG	Q32M88	737 aa		13.77	□□□□□ -0.21
CHFR-223	ENST00000544268	MRPL2	Q5T653	305 aa	Known RBP	13.77	□□□□□ -0.21
CHFR-223	ENST00000544268	FAM27D1	Q5T7N8	215 aa		13.77	□□□□□ -0.21
CHFR-223	ENST00000544268	RGS7BP	Q6MZT1	257 aa	Predicted RBP	13.77	□□□□□ -0.21
CHFR-223	ENST00000544268	CDC73	Q6P1J9	531 aa		13.77	□□□□□ -0.21
CHFR-223	ENST00000544268	OR2L13	Q8N349	312 aa		13.77	□□□□□ -0.21
CHFR-223	ENST00000544268	CLRN3	Q8NCR9	226 aa		13.77	□□□□□ -0.21
CHFR-223	ENST00000544268	OR4K14	Q8NGD5	310 aa		13.77	□□□□□ -0.21
CHFR-223	ENST00000544268	RERG	Q96A58	199 aa	Predicted RBP	13.77	□□□□□ -0.21
CHFR-223	ENST00000544268	ELF4	Q99607	663 aa	Predicted RBP	13.77	□□□□□ -0.21
CHFR-223	ENST00000544268	UBQLN3	Q9H347	655 aa		13.77	□□□□□ -0.21
CHFR-223	ENST00000544268	HPF1	Q9NWY4	346 aa		13.77	□□□□□ -0.21
CHFR-223	ENST00000544268	HCN3	Q9P1Z3	774 aa		13.77	□□□□□ -0.21
CHFR-223	ENST00000544268	TMEM129	A0AVI4	362 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	SLC9B1P1	A6NJY1	282 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	ABCD4	O14678	606 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	CASK	O14936	926 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	PRKN	O60260	465 aa	Predicted RBP	13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	REM1	O75628	298 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	MRPL3	P09001	348 aa	Known RBP	13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	MYF5	P13349	255 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	FPR3	P25089	353 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	FGF9	P31371	208 aa	Predicted RBP	13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	ATP6V1E1	P36543	226 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	TSFM	P43897	325 aa	Known RBP	13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	ANXA11	P50995	505 aa	Known RBP	13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	EEF1A1	P68104	462 aa	Known RBP	13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	SHC2	P98077	582 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	DSG2	Q14126	1118 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	MBOAT2	Q6ZWT7	520 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	TMEM99	Q8N816	258 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	UXS1	Q8NBZ7	420 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	CAMKV	Q8NCB2	501 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	PIGK	Q92643	395 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	MAP3K3	Q99759	626 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	DLL4	Q9NR61	685 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	TRAV27	A0A087WT01	109 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	RHPN2P1	A8MT19	583 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	SLC19A2	O60779	497 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	CPM	P14384	443 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	GFER	P55789	205 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	VSX2	P58304	361 aa	Predicted RBP	13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	TPBG	Q13641	420 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	NKAIN2	Q5VXU1	208 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	IL20RB	Q6UXL0	311 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	SLC35F3	Q8IY50	421 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	ZNF565	Q8N9K5	539 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	C19orf47	Q8N9M1	422 aa	Known RBP	13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	GRHL3	Q8TE85	626 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	TIMP4	Q99727	224 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	ABCG5	Q9H222	651 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	MRPS18A	Q9NVS2	196 aa	Known RBP	13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	LRIT1	Q9P2V4	623 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	TINAG	Q9UJW2	476 aa		13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	RPH3A	Q9Y2J0	694 aa	Predicted RBP	13.76	□□□□□ -0.21
CHFR-223	ENST00000544268	GPR171	O14626	319 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	GNB5	O14775	395 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	MAGEB4	O15481	346 aa	Predicted RBP	13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	NDUFS6	O75380	124 aa	Known RBP	13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	TGM6	O95932	706 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	GYPB	P06028	91 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	SMIM10L1	P0DMW3	83 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	C4BPB	P20851	252 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	NOS3	P29474	1203 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	ARRB1	P49407	418 aa	Predicted RBP	13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	CRYZ	Q08257	329 aa	Known RBP	13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	DECR1	Q16698	335 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	MARCH9	Q86YJ5	346 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	ARIH2OS	Q8N7S6	290 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	ZNF614	Q8N883	585 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	CYB561A3	Q8NBI2	242 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	OR4N2	Q8NGD1	307 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	OR5T2	Q8NGG2	359 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	OR13C2	Q8NGS9	318 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	MOAP1	Q96BY2	351 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	SMIM10	Q96HG1	83 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	OR52D1	Q9H346	318 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	CCDC86	Q9H6F5	360 aa	Known RBP	13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	NUDT15	Q9NV35	164 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	KLHL28	Q9NXS3	571 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268		E9PI62	339 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	HRK	O00198	91 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	GABRP	O00591	440 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	CDC123	O75794	336 aa	Predicted RBP	13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	SULT1A3	P0DMM9	295 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	SULT1A4	P0DMN0	295 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	NT5E	P21589	574 aa		13.75	□□□□□ -0.21
CHFR-223	ENST00000544268	SDHB	P21912	280 aa		13.75	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms