RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 PIPOXQ9P0Z9 390 aa12.59□□□□□ -0.39
VPS33A-208ENST00000543633 TBC1D29Q9UFV1 150 aa12.59□□□□□ -0.39
VPS33A-208ENST00000543633 CA5BQ9Y2D0 317 aa12.59□□□□□ -0.39
VPS33A-208ENST00000543633 SCN3AQ9NY46 2000 aa12.58□□□□□ -0.4
VPS33A-208ENST00000543633 TNRC18O15417 2968 aaPredicted RBP12.58□□□□□ -0.4
VPS33A-208ENST00000543633 EFCAB7A8K855 629 aa12.58□□□□□ -0.4
VPS33A-208ENST00000543633 ARPC1BO15143 372 aaKnown RBP12.58□□□□□ -0.4
VPS33A-208ENST00000543633 CTSVO60911 334 aa12.58□□□□□ -0.4
VPS33A-208ENST00000543633 LDB3O75112 727 aa12.58□□□□□ -0.4
VPS33A-208ENST00000543633 B3GALNT1O75752 331 aa12.58□□□□□ -0.4
VPS33A-208ENST00000543633 RGS11O94810 467 aa12.58□□□□□ -0.4
VPS33A-208ENST00000543633 NDUFB6O95139 128 aa12.58□□□□□ -0.4
VPS33A-208ENST00000543633 CFDP00746 253 aaPredicted RBP12.58□□□□□ -0.4
VPS33A-208ENST00000543633 UBL4AP11441 157 aa12.58□□□□□ -0.4
VPS33A-208ENST00000543633 SPI1P17947 270 aa12.58□□□□□ -0.4
VPS33A-208ENST00000543633 FAUP35544 74 aaKnown RBP12.58□□□□□ -0.4
VPS33A-208ENST00000543633 ZNHIT3Q15649 155 aaPredicted RBP12.58□□□□□ -0.4
VPS33A-208ENST00000543633 ZNF684Q5T5D7 378 aa12.58□□□□□ -0.4
VPS33A-208ENST00000543633 B3GNTL1Q67FW5 361 aaPredicted RBP12.58□□□□□ -0.4
VPS33A-208ENST00000543633 SFRP4Q6FHJ7 346 aaPredicted RBP12.58□□□□□ -0.4
VPS33A-208ENST00000543633 C3P1Q6ZMU1 363 aa12.58□□□□□ -0.4
VPS33A-208ENST00000543633 DGLUCYQ7Z3D6 616 aa12.58□□□□□ -0.4
VPS33A-208ENST00000543633 BPHLQ86WA6 291 aaPredicted RBP12.58□□□□□ -0.4
VPS33A-208ENST00000543633 IZUMO1Q8IYV9 350 aa12.58□□□□□ -0.4
VPS33A-208ENST00000543633 NPEPL1Q8NDH3 523 aa12.58□□□□□ -0.4
VPS33A-208ENST00000543633 SMAP2Q8WU79 429 aaPredicted RBP12.58□□□□□ -0.4
VPS33A-208ENST00000543633 THEM6Q8WUY1 208 aa12.58□□□□□ -0.4
VPS33A-208ENST00000543633 RERGQ96A58 199 aaPredicted RBP12.58□□□□□ -0.4
VPS33A-208ENST00000543633 MSANTD3Q96H12 275 aa12.58□□□□□ -0.4
VPS33A-208ENST00000543633 HSPA12BQ96MM6 686 aa12.58□□□□□ -0.4
VPS33A-208ENST00000543633 NOX3Q9HBY0 568 aa12.58□□□□□ -0.4
VPS33A-208ENST00000543633 NKIRAS2Q9NYR9 191 aa12.58□□□□□ -0.4
VPS33A-208ENST00000543633 TAS2R10Q9NYW0 307 aa12.58□□□□□ -0.4
VPS33A-208ENST00000543633 GDE1Q9NZC3 331 aa12.58□□□□□ -0.4
VPS33A-208ENST00000543633 IER3IP1Q9Y5U9 82 aa12.58□□□□□ -0.4
VPS33A-208ENST00000543633 C2orf16Q68DN1 1984 aa12.58□□□□□ -0.4
VPS33A-208ENST00000543633 A0A1W2PPK0 400 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 L7N2F9 121 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 GALR3O60755 368 aaPredicted RBP12.57□□□□□ -0.4
VPS33A-208ENST00000543633 ZNF432O94892 652 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 GLCEO94923 617 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 ADRB1P08588 477 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 ZNF250P15622 560 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 CFPP27918 469 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 SLC25A1P53007 311 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 RPS4XP62701 263 aaKnown RBP12.57□□□□□ -0.4
VPS33A-208ENST00000543633 STX4Q12846 297 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 EXOSC7Q15024 291 aaKnown RBP12.57□□□□□ -0.4
VPS33A-208ENST00000543633 TMEM69Q5SWH9 247 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 HES5Q5TA89 166 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 RNF44Q7L0R7 432 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 CACUL1Q86Y37 369 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 ARL14Q8N4G2 192 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 MEIOBQ8N635 442 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 WBP1Q96G27 269 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 CCDC120Q96HB5 630 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 PDCD1LG2Q9BQ51 273 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 OR10A4Q9H209 315 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 LIN7BQ9HAP6 207 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 ZDHHC4Q9NPG8 344 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 CD93Q9NPY3 652 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 ZNF224Q9NZL3 707 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 ING1Q9UK53 422 aaPredicted RBP12.57□□□□□ -0.4
VPS33A-208ENST00000543633 COPS3Q9UNS2 423 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 SLC6A5Q9Y345 797 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 ZNF337Q9Y3M9 751 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 SESN1Q9Y6P5 492 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 SZT2Q5T011 3432 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 TBC1D3IA0A087WXS9 549 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.57□□□□□ -0.4
VPS33A-208ENST00000543633 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.57□□□□□ -0.4
VPS33A-208ENST00000543633 CIB4A0PJX0 185 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 HSPB2A8KAH6 182 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 HMSDA8MTL9 139 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 MCIDASD6RGH6 385 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 CBX7O95931 251 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 TACSTD2P09758 323 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 CT62P0C5K7 136 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 SLC35E2P0CK97 266 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 APEHP13798 732 aaKnown RBP12.57□□□□□ -0.4
VPS33A-208ENST00000543633 FCARP24071 287 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 CALCRP30988 508 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 EMDP50402 254 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 P2RX1P51575 399 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 ART1P52961 327 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 PRPS1P60891 318 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 ID2Q02363 134 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 COL9A2Q14055 689 aaPredicted RBP12.57□□□□□ -0.4
VPS33A-208ENST00000543633 HSPB2Q16082 182 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 TMEM255AQ5JRV8 349 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 SLC25A25Q6KCM7 469 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 APOOLQ6UXV4 268 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 PRSS42Q7Z5A4 293 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 ZAR1Q86SH2 424 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 NAXDQ8IW45 347 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 SIX5Q8N196 739 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 GALNT11Q8NCW6 608 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 SYNPRQ8TBG9 265 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 THRSPQ92748 146 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 ZNF578Q96N58 590 aaPredicted RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms