RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 EFNA4P52798 201 aa12.89□□□□□ -0.35
VPS28-215ENST00000531924 SLC18A1P54219 525 aa12.89□□□□□ -0.35
VPS28-215ENST00000531924 SNRPD2P62316 118 aaKnown RBP12.89□□□□□ -0.35
VPS28-215ENST00000531924 MAPK11Q15759 364 aa12.89□□□□□ -0.35
VPS28-215ENST00000531924 ELOA3BQ3SY89 546 aa12.89□□□□□ -0.35
VPS28-215ENST00000531924 NIPAL3Q6P499 406 aa12.89□□□□□ -0.35
VPS28-215ENST00000531924 CREB3L2Q70SY1 520 aa12.89□□□□□ -0.35
VPS28-215ENST00000531924 SERPINA11Q86U17 422 aa12.89□□□□□ -0.35
VPS28-215ENST00000531924 ZNF525Q8N782 197 aa12.89□□□□□ -0.35
VPS28-215ENST00000531924 ELOA3Q8NG57 546 aa12.89□□□□□ -0.35
VPS28-215ENST00000531924 SPATA3Q8NHX4 192 aa12.89□□□□□ -0.35
VPS28-215ENST00000531924 VPS33AQ96AX1 596 aa12.89□□□□□ -0.35
VPS28-215ENST00000531924 TNFRSF13CQ96RJ3 184 aa12.89□□□□□ -0.35
VPS28-215ENST00000531924 KCNK17Q96T54 332 aa12.89□□□□□ -0.35
VPS28-215ENST00000531924 RNF212BA8MTL3 300 aa12.88□□□□□ -0.35
VPS28-215ENST00000531924 FRS3O43559 492 aa12.88□□□□□ -0.35
VPS28-215ENST00000531924 SELENOPP49908 381 aa12.88□□□□□ -0.35
VPS28-215ENST00000531924 MVDP53602 400 aa12.88□□□□□ -0.35
VPS28-215ENST00000531924 SLC25A3Q00325 362 aa12.88□□□□□ -0.35
VPS28-215ENST00000531924 IL1RL1Q01638 556 aa12.88□□□□□ -0.35
VPS28-215ENST00000531924 C1DQ13901 141 aaKnown RBP12.88□□□□□ -0.35
VPS28-215ENST00000531924 TMEM249Q2WGJ8 235 aa12.88□□□□□ -0.35
VPS28-215ENST00000531924 TBRG1Q3YBR2 411 aa12.88□□□□□ -0.35
VPS28-215ENST00000531924 GTDC1Q4AE62 458 aa12.88□□□□□ -0.35
VPS28-215ENST00000531924 LSRQ86X29 649 aaPredicted RBP12.88□□□□□ -0.35
VPS28-215ENST00000531924 GOLGA6L1Q8N7Z2 621 aa12.88□□□□□ -0.35
VPS28-215ENST00000531924 OR1K1Q8NGR3 316 aa12.88□□□□□ -0.35
VPS28-215ENST00000531924 BBS10Q8TAM1 723 aa12.88□□□□□ -0.35
VPS28-215ENST00000531924 STK35Q8TDR2 534 aa12.88□□□□□ -0.35
VPS28-215ENST00000531924 MAELQ96JY0 434 aaKnown RBP12.88□□□□□ -0.35
VPS28-215ENST00000531924 ALKBH3Q96Q83 286 aaPredicted RBP12.88□□□□□ -0.35
VPS28-215ENST00000531924 OR52B2Q96RD2 323 aa12.88□□□□□ -0.35
VPS28-215ENST00000531924 REPIN1Q9BWE0 567 aaKnown RBP12.88□□□□□ -0.35
VPS28-215ENST00000531924 MOV10Q9HCE1 1003 aaKnown RBP12.88□□□□□ -0.35
VPS28-215ENST00000531924 SONP18583 2426 aaKnown RBP12.87□□□□□ -0.35
VPS28-215ENST00000531924 VSTM5A8MXK1 200 aa12.87□□□□□ -0.35
VPS28-215ENST00000531924 CLIC1O00299 241 aa12.87□□□□□ -0.35
VPS28-215ENST00000531924 ERLIN1O75477 346 aa12.87□□□□□ -0.35
VPS28-215ENST00000531924 F12P00748 615 aaPredicted RBP12.87□□□□□ -0.35
VPS28-215ENST00000531924 ZNF43P17038 809 aa12.87□□□□□ -0.35
VPS28-215ENST00000531924 USF1P22415 310 aaPredicted RBP12.87□□□□□ -0.35
VPS28-215ENST00000531924 SERPINF1P36955 418 aa12.87□□□□□ -0.35
VPS28-215ENST00000531924 RPS5P46782 204 aaKnown RBP12.87□□□□□ -0.35
VPS28-215ENST00000531924 SH3BGRP55822 239 aaPredicted RBP12.87□□□□□ -0.35
VPS28-215ENST00000531924 LOXL1Q08397 574 aaPredicted RBP12.87□□□□□ -0.35
VPS28-215ENST00000531924 RGNQ15493 299 aa12.87□□□□□ -0.35
VPS28-215ENST00000531924 CARTPTQ16568 116 aa12.87□□□□□ -0.35
VPS28-215ENST00000531924 CYB5R2Q6BCY4 276 aa12.87□□□□□ -0.35
VPS28-215ENST00000531924 SLC46A3Q7Z3Q1 461 aa12.87□□□□□ -0.35
VPS28-215ENST00000531924 KRT73Q86Y46 540 aa12.87□□□□□ -0.35
VPS28-215ENST00000531924 OR9I1Q8NGQ6 314 aa12.87□□□□□ -0.35
VPS28-215ENST00000531924 MFSD8Q8NHS3 518 aa12.87□□□□□ -0.35
VPS28-215ENST00000531924 RNF217Q8TC41 542 aa12.87□□□□□ -0.35
VPS28-215ENST00000531924 PROX1Q92786 737 aa12.87□□□□□ -0.35
VPS28-215ENST00000531924 C3orf49Q96BT1 292 aa12.87□□□□□ -0.35
VPS28-215ENST00000531924 ZNF317Q96PQ6 595 aaPredicted RBP12.87□□□□□ -0.35
VPS28-215ENST00000531924 SLC38A2Q96QD8 506 aa12.87□□□□□ -0.35
VPS28-215ENST00000531924 VRK1Q99986 396 aaPredicted RBP12.87□□□□□ -0.35
VPS28-215ENST00000531924 BEX2Q9BXY8 128 aa12.87□□□□□ -0.35
VPS28-215ENST00000531924 A4GALTQ9NPC4 353 aa12.87□□□□□ -0.35
VPS28-215ENST00000531924 SELENONQ9NZV5 590 aa12.87□□□□□ -0.35
VPS28-215ENST00000531924 SLC13A4Q9UKG4 626 aa12.87□□□□□ -0.35
VPS28-215ENST00000531924 CDC42EP3Q9UKI2 254 aa12.87□□□□□ -0.35
VPS28-215ENST00000531924 ATRQ13535 2644 aa12.87□□□□□ -0.35
VPS28-215ENST00000531924 A0A096LPE4 126 aa12.86□□□□□ -0.35
VPS28-215ENST00000531924 IGHV1-18A0A0C4DH31 117 aa12.86□□□□□ -0.35
VPS28-215ENST00000531924 A0A1W2PPZ6 126 aa12.86□□□□□ -0.35
VPS28-215ENST00000531924 POLR3GO15318 223 aaPredicted RBP12.86□□□□□ -0.35
VPS28-215ENST00000531924 ZNF500O60304 480 aaPredicted RBP12.86□□□□□ -0.35
VPS28-215ENST00000531924 PDLIM4P50479 330 aa12.86□□□□□ -0.35
VPS28-215ENST00000531924 CLDN17P56750 224 aa12.86□□□□□ -0.35
VPS28-215ENST00000531924 NCALDP61601 193 aa12.86□□□□□ -0.35
VPS28-215ENST00000531924 VLDLRP98155 873 aa12.86□□□□□ -0.35
VPS28-215ENST00000531924 HOXC5Q00444 222 aa12.86□□□□□ -0.35
VPS28-215ENST00000531924 ROR2Q01974 943 aaKnown RBP12.86□□□□□ -0.35
VPS28-215ENST00000531924 LGALS3BPQ08380 585 aa12.86□□□□□ -0.35
VPS28-215ENST00000531924 FADDQ13158 208 aa12.86□□□□□ -0.35
VPS28-215ENST00000531924 C6orf52Q5T4I8 152 aa12.86□□□□□ -0.35
VPS28-215ENST00000531924 ANKRD16Q6P6B7 361 aa12.86□□□□□ -0.35
VPS28-215ENST00000531924 SLC2A7Q6PXP3 512 aa12.86□□□□□ -0.35
VPS28-215ENST00000531924 VHLLQ6RSH7 139 aa12.86□□□□□ -0.35
VPS28-215ENST00000531924 EPHX4Q8IUS5 362 aa12.86□□□□□ -0.35
VPS28-215ENST00000531924 KDM8Q8N371 416 aa12.86□□□□□ -0.35
VPS28-215ENST00000531924 GPR137CQ8N3F9 429 aa12.86□□□□□ -0.35
VPS28-215ENST00000531924 C10orf105Q8TEF2 133 aa12.86□□□□□ -0.35
VPS28-215ENST00000531924 MAL2Q969L2 176 aa12.86□□□□□ -0.35
VPS28-215ENST00000531924 SLC35B4Q969S0 331 aa12.86□□□□□ -0.35
VPS28-215ENST00000531924 KATNB1Q9BVA0 655 aa12.86□□□□□ -0.35
VPS28-215ENST00000531924 SPATA5L1Q9BVQ7 753 aa12.86□□□□□ -0.35
VPS28-215ENST00000531924 BCL2L10Q9HD36 194 aa12.86□□□□□ -0.35
VPS28-215ENST00000531924 PCDHB14Q9Y5E9 798 aa12.86□□□□□ -0.35
VPS28-215ENST00000531924 USH1CQ9Y6N9 552 aa12.86□□□□□ -0.35
VPS28-215ENST00000531924 COL6A5A8TX70 2615 aa12.85□□□□□ -0.35
VPS28-215ENST00000531924 TMEM229AB2RXF0 380 aa12.85□□□□□ -0.35
VPS28-215ENST00000531924 AIM2O14862 343 aa12.85□□□□□ -0.35
VPS28-215ENST00000531924 AKAP8O43823 692 aaKnown RBP12.85□□□□□ -0.35
VPS28-215ENST00000531924 OR2T1O43869 369 aa12.85□□□□□ -0.35
VPS28-215ENST00000531924 SLC43A1O75387 559 aa12.85□□□□□ -0.35
VPS28-215ENST00000531924 UPK3AO75631 287 aa12.85□□□□□ -0.35
VPS28-215ENST00000531924 NUDT7P0C024 238 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms