RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 ADPRHL2Q9NX46 363 aa9.9□□□□□ -0.82
VPS28-214ENST00000531032 CALML5Q9NZT1 146 aa9.9□□□□□ -0.82
VPS28-214ENST00000531032 LPAR3Q9UBY5 353 aa9.9□□□□□ -0.82
VPS28-214ENST00000531032 CHST2Q9Y4C5 530 aa9.9□□□□□ -0.82
VPS28-214ENST00000531032 A0A096LPI6 279 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 ARPC4-TTLL3A0A0A6YYG9 625 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 OR6C65A6NJZ3 312 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 TMEM229AB2RXF0 380 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 ZNF587BE7ETH6 402 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 NDUFS8O00217 210 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 KLF11O14901 512 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 SNNO75324 88 aaPredicted RBP9.89□□□□□ -0.83
VPS28-214ENST00000531032 BCHEP06276 602 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 TFPTP0C1Z6 253 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 ZCCHC18P0CG32 403 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 ETFAP13804 333 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 IDO1P14902 403 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 SELENOPP49908 381 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 SLC18A1P54219 525 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 COPZ1P61923 177 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 SNRPD2P62316 118 aaKnown RBP9.89□□□□□ -0.83
VPS28-214ENST00000531032 LSM11P83369 360 aaKnown RBP eCLIP9.89□□□□□ -0.83
VPS28-214ENST00000531032 LGALS3BPQ08380 585 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 LARS2Q15031 903 aaKnown RBP9.89□□□□□ -0.83
VPS28-214ENST00000531032 ZSWIM7Q19AV6 140 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 C3orf36Q3SXR2 165 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 PDCD4Q53EL6 469 aaKnown RBP9.89□□□□□ -0.83
VPS28-214ENST00000531032 AGBL2Q5U5Z8 902 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 C1orf140Q5VVS0 124 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 TMEM225Q6GV28 225 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 CREB3L2Q70SY1 520 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 EPHX4Q8IUS5 362 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 CLIP4Q8N3C7 705 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 MAGEE2Q8TD90 523 aaPredicted RBP9.89□□□□□ -0.83
VPS28-214ENST00000531032 SLC38A5Q8WUX1 472 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 DYDC1Q8WWB3 177 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 C3orf49Q96BT1 292 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 FBXO17Q96EF6 278 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 MAELQ96JY0 434 aaKnown RBP9.89□□□□□ -0.83
VPS28-214ENST00000531032 SORCS2Q96PQ0 1159 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 ZNF317Q96PQ6 595 aaPredicted RBP9.89□□□□□ -0.83
VPS28-214ENST00000531032 ALKBH3Q96Q83 286 aaPredicted RBP9.89□□□□□ -0.83
VPS28-214ENST00000531032 TAPBPLQ9BX59 468 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 BEX2Q9BXY8 128 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 TPT1P8Q9HAU6 139 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 CA10Q9NS85 328 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 CRNNQ9UBG3 495 aaPredicted RBP9.89□□□□□ -0.83
VPS28-214ENST00000531032 ZNF443Q9Y2A4 671 aaPredicted RBP9.89□□□□□ -0.83
VPS28-214ENST00000531032 FKBP7Q9Y680 259 aa9.89□□□□□ -0.83
VPS28-214ENST00000531032 MALRD1Q5VYJ5 2156 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 FTCDNL1E5RQL4 147 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 FZD7O75084 574 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 SLC22A3O75751 556 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 KRT33AO76009 404 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 PDE5AO76074 875 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 LGI1O95970 557 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 IGLV1-44P01699 117 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 PRG2P13727 222 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 THBS2P35442 1172 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 SERPINF1P36955 418 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 CRATP43155 626 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 NR4A2P43354 598 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 GZMKP49863 264 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 PDLIM4P50479 330 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 DSTNP60981 165 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 NAAAQ02083 359 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 RPS26P11Q5JNZ5 115 aaPredicted RBP9.88□□□□□ -0.83
VPS28-214ENST00000531032 PRAMEF8Q5VWM4 474 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 PRAMEF7Q5VXH5 474 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 MSANTD1Q6ZTZ1 278 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 LINGO2Q7L985 606 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 SERPINA11Q86U17 422 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 FAM169BQ8N8A8 192 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 MFSD8Q8NHS3 518 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 STK35Q8TDR2 534 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 LRRC8CQ8TDW0 803 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 BCL2L2Q92843 193 aaPredicted RBP9.88□□□□□ -0.83
VPS28-214ENST00000531032 TMEM19Q96HH6 336 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 PIMREGQ9BSJ6 248 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 PTDSS2Q9BVG9 487 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 SPATA9Q9BWV2 254 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 LINC00470Q9BZP3 86 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 SHARPINQ9H0F6 387 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 NELFAQ9H3P2 528 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 MOV10Q9HCE1 1003 aaKnown RBP9.88□□□□□ -0.83
VPS28-214ENST00000531032 MYOZ1Q9NP98 299 aaPredicted RBP9.88□□□□□ -0.83
VPS28-214ENST00000531032 SDR39U1Q9NRG7 319 aaPredicted RBP9.88□□□□□ -0.83
VPS28-214ENST00000531032 THUMPD1Q9NXG2 353 aaKnown RBP9.88□□□□□ -0.83
VPS28-214ENST00000531032 RASD1Q9Y272 281 aa9.88□□□□□ -0.83
VPS28-214ENST00000531032 A0A0G2JPF8 293 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 LOC390937A0A1W2PQ73 354 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 HNRNPCL2B2RXH8 293 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 HNRNPCL3B7ZW38 293 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 B9A039 149 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 LMX1BO60663 402 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 HNRNPCL1O60812 293 aaKnown RBP9.87□□□□□ -0.83
VPS28-214ENST00000531032 UPK3AO75631 287 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 ZNF432O94892 652 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 AHSA1O95433 338 aa9.87□□□□□ -0.83
VPS28-214ENST00000531032 ANP32DO95626 131 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms