RNA–Protein interactions for RNA: ENST00000527680.1

TRAPPC4-208, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 569 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-208ENST00000527680 NIPAL3Q6P499 406 aa19.55■□□□□ 0.72
TRAPPC4-208ENST00000527680 CREB3L2Q70SY1 520 aa19.55■□□□□ 0.72
TRAPPC4-208ENST00000527680 TMEM19Q96HH6 336 aa19.55■□□□□ 0.72
TRAPPC4-208ENST00000527680 SPATA9Q9BWV2 254 aa19.55■□□□□ 0.72
TRAPPC4-208ENST00000527680 NKIRAS1Q9NYS0 192 aa19.55■□□□□ 0.72
TRAPPC4-208ENST00000527680 ZIM2Q9NZV7 527 aa19.55■□□□□ 0.72
TRAPPC4-208ENST00000527680 IFT52Q9Y366 437 aa19.55■□□□□ 0.72
TRAPPC4-208ENST00000527680 YLPM1P49750 1951 aaKnown RBP19.55■□□□□ 0.72
TRAPPC4-208ENST00000527680 DSPPQ9NZW4 1301 aa19.54■□□□□ 0.72
TRAPPC4-208ENST00000527680 ANK3Q12955 4377 aaKnown RBP19.54■□□□□ 0.72
TRAPPC4-208ENST00000527680 A0A096LPI6 279 aa19.54■□□□□ 0.72
TRAPPC4-208ENST00000527680 UBDO15205 165 aa19.54■□□□□ 0.72
TRAPPC4-208ENST00000527680 LY6HO94772 140 aa19.54■□□□□ 0.72
TRAPPC4-208ENST00000527680 AHSA1O95433 338 aa19.54■□□□□ 0.72
TRAPPC4-208ENST00000527680 F12P00748 615 aaPredicted RBP19.54■□□□□ 0.72
TRAPPC4-208ENST00000527680 CSF3P09919 207 aa19.54■□□□□ 0.72
TRAPPC4-208ENST00000527680 GTF2E2P29084 291 aaKnown RBP19.54■□□□□ 0.72
TRAPPC4-208ENST00000527680 SELENOPP49908 381 aa19.54■□□□□ 0.72
TRAPPC4-208ENST00000527680 LGALS3BPQ08380 585 aa19.54■□□□□ 0.72
TRAPPC4-208ENST00000527680 TBRG1Q3YBR2 411 aa19.54■□□□□ 0.72
TRAPPC4-208ENST00000527680 GTDC1Q4AE62 458 aa19.54■□□□□ 0.72
TRAPPC4-208ENST00000527680 ZNF311Q5JNZ3 666 aa19.54■□□□□ 0.72
TRAPPC4-208ENST00000527680 RNF220Q5VTB9 566 aa19.54■□□□□ 0.72
TRAPPC4-208ENST00000527680 SERPINA11Q86U17 422 aa19.54■□□□□ 0.72
TRAPPC4-208ENST00000527680 OR1K1Q8NGR3 316 aa19.54■□□□□ 0.72
TRAPPC4-208ENST00000527680 C10orf105Q8TEF2 133 aa19.54■□□□□ 0.72
TRAPPC4-208ENST00000527680 NANOS1Q8WY41 292 aaKnown RBP19.54■□□□□ 0.72
TRAPPC4-208ENST00000527680 PROX1Q92786 737 aa19.54■□□□□ 0.72
TRAPPC4-208ENST00000527680 VPS33AQ96AX1 596 aa19.54■□□□□ 0.72
TRAPPC4-208ENST00000527680 BEX2Q9BXY8 128 aa19.54■□□□□ 0.72
TRAPPC4-208ENST00000527680 OBP2BQ9NPH6 170 aa19.54■□□□□ 0.72
TRAPPC4-208ENST00000527680 CDC42EP3Q9UKI2 254 aa19.54■□□□□ 0.72
TRAPPC4-208ENST00000527680 RAB21Q9UL25 225 aa19.54■□□□□ 0.72
TRAPPC4-208ENST00000527680 RASD1Q9Y272 281 aa19.54■□□□□ 0.72
TRAPPC4-208ENST00000527680 A0A096LNT2 108 aa19.53■□□□□ 0.72
TRAPPC4-208ENST00000527680 OR6C65A6NJZ3 312 aa19.53■□□□□ 0.72
TRAPPC4-208ENST00000527680 FRS3O43559 492 aa19.53■□□□□ 0.72
TRAPPC4-208ENST00000527680 CRYAAP02489 173 aa19.53■□□□□ 0.72
TRAPPC4-208ENST00000527680 USF1P22415 310 aaPredicted RBP19.53■□□□□ 0.72
TRAPPC4-208ENST00000527680 VLDLRP98155 873 aa19.53■□□□□ 0.72
TRAPPC4-208ENST00000527680 CARTPTQ16568 116 aa19.53■□□□□ 0.72
TRAPPC4-208ENST00000527680 KDM8Q8N371 416 aa19.53■□□□□ 0.72
TRAPPC4-208ENST00000527680 STK35Q8TDR2 534 aa19.53■□□□□ 0.72
TRAPPC4-208ENST00000527680 SLC38A2Q96QD8 506 aa19.53■□□□□ 0.72
TRAPPC4-208ENST00000527680 VRK1Q99986 396 aaPredicted RBP19.53■□□□□ 0.72
TRAPPC4-208ENST00000527680 RPS6KB2Q9UBS0 482 aa19.53■□□□□ 0.72
TRAPPC4-208ENST00000527680 FKBP7Q9Y680 259 aa19.53■□□□□ 0.72
TRAPPC4-208ENST00000527680 ARFGEF3Q5TH69 2177 aa19.52■□□□□ 0.72
TRAPPC4-208ENST00000527680 A0A096LPE4 126 aa19.52■□□□□ 0.72
TRAPPC4-208ENST00000527680 IGHV1-18A0A0C4DH31 117 aa19.52■□□□□ 0.72
TRAPPC4-208ENST00000527680 A0A1W2PPZ6 126 aa19.52■□□□□ 0.72
TRAPPC4-208ENST00000527680 C5orf58C9J3I9 102 aa19.52■□□□□ 0.72
TRAPPC4-208ENST00000527680 NR5A2O00482 541 aa19.52■□□□□ 0.72
TRAPPC4-208ENST00000527680 ZNF43P17038 809 aa19.52■□□□□ 0.72
TRAPPC4-208ENST00000527680 PAX7P23759 505 aa19.52■□□□□ 0.72
TRAPPC4-208ENST00000527680 SERPINF1P36955 418 aa19.52■□□□□ 0.72
TRAPPC4-208ENST00000527680 RPS5P46782 204 aaKnown RBP19.52■□□□□ 0.72
TRAPPC4-208ENST00000527680 PDLIM4P50479 330 aa19.52■□□□□ 0.72
TRAPPC4-208ENST00000527680 SNRPD2P62316 118 aaKnown RBP19.52■□□□□ 0.72
TRAPPC4-208ENST00000527680 LSM11P83369 360 aaKnown RBP eCLIP19.52■□□□□ 0.72
TRAPPC4-208ENST00000527680 HOXC5Q00444 222 aa19.52■□□□□ 0.72
TRAPPC4-208ENST00000527680 VHLLQ6RSH7 139 aa19.52■□□□□ 0.72
TRAPPC4-208ENST00000527680 MSANTD1Q6ZTZ1 278 aa19.52■□□□□ 0.72
TRAPPC4-208ENST00000527680 EPHX4Q8IUS5 362 aa19.52■□□□□ 0.72
TRAPPC4-208ENST00000527680 MIER2Q8N344 545 aa19.52■□□□□ 0.72
TRAPPC4-208ENST00000527680 OR9I1Q8NGQ6 314 aa19.52■□□□□ 0.72
TRAPPC4-208ENST00000527680 MFSD8Q8NHS3 518 aa19.52■□□□□ 0.72
TRAPPC4-208ENST00000527680 TMEM158Q8WZ71 300 aa19.52■□□□□ 0.72
TRAPPC4-208ENST00000527680 C3orf49Q96BT1 292 aa19.52■□□□□ 0.72
TRAPPC4-208ENST00000527680 MAELQ96JY0 434 aaKnown RBP19.52■□□□□ 0.72
TRAPPC4-208ENST00000527680 ALKBH3Q96Q83 286 aaPredicted RBP19.52■□□□□ 0.72
TRAPPC4-208ENST00000527680 OR52B2Q96RD2 323 aa19.52■□□□□ 0.72
TRAPPC4-208ENST00000527680 SDR39U1Q9NRG7 319 aaPredicted RBP19.52■□□□□ 0.72
TRAPPC4-208ENST00000527680 UPK3AO75631 287 aa19.51■□□□□ 0.71
TRAPPC4-208ENST00000527680 FAM157CP0CG43 387 aa19.51■□□□□ 0.71
TRAPPC4-208ENST00000527680 P2RY4P51582 365 aa19.51■□□□□ 0.71
TRAPPC4-208ENST00000527680 CLDN17P56750 224 aa19.51■□□□□ 0.71
TRAPPC4-208ENST00000527680 MAGOHP61326 146 aaKnown RBP19.51■□□□□ 0.71
TRAPPC4-208ENST00000527680 TUBA1BP68363 451 aa19.51■□□□□ 0.71
TRAPPC4-208ENST00000527680 TUBA4AP68366 448 aa19.51■□□□□ 0.71
TRAPPC4-208ENST00000527680 SWI5Q1ZZU3 235 aa19.51■□□□□ 0.71
TRAPPC4-208ENST00000527680 MST1LQ2TV78 715 aa19.51■□□□□ 0.71
TRAPPC4-208ENST00000527680 ANKRD16Q6P6B7 361 aa19.51■□□□□ 0.71
TRAPPC4-208ENST00000527680 TUBA1AQ71U36 451 aa19.51■□□□□ 0.71
TRAPPC4-208ENST00000527680 SLC46A3Q7Z3Q1 461 aa19.51■□□□□ 0.71
TRAPPC4-208ENST00000527680 BCL2L2Q92843 193 aaPredicted RBP19.51■□□□□ 0.71
TRAPPC4-208ENST00000527680 BOD1Q96IK1 185 aa19.51■□□□□ 0.71
TRAPPC4-208ENST00000527680 RAD21L1Q9H4I0 556 aa19.51■□□□□ 0.71
TRAPPC4-208ENST00000527680 CHST2Q9Y4C5 530 aa19.51■□□□□ 0.71
TRAPPC4-208ENST00000527680 PCDHB14Q9Y5E9 798 aa19.51■□□□□ 0.71
TRAPPC4-208ENST00000527680 CLIC1O00299 241 aa19.5■□□□□ 0.71
TRAPPC4-208ENST00000527680 NUDT7P0C024 238 aa19.5■□□□□ 0.71
TRAPPC4-208ENST00000527680 IL1RL1Q01638 556 aa19.5■□□□□ 0.71
TRAPPC4-208ENST00000527680 ROR2Q01974 943 aaKnown RBP19.5■□□□□ 0.71
TRAPPC4-208ENST00000527680 C1DQ13901 141 aaKnown RBP19.5■□□□□ 0.71
TRAPPC4-208ENST00000527680 GGTLC2Q14390 218 aa19.5■□□□□ 0.71
TRAPPC4-208ENST00000527680 RGNQ15493 299 aa19.5■□□□□ 0.71
TRAPPC4-208ENST00000527680 MAL2Q969L2 176 aa19.5■□□□□ 0.71
TRAPPC4-208ENST00000527680 SHARPINQ9H0F6 387 aa19.5■□□□□ 0.71
TRAPPC4-208ENST00000527680 CA10Q9NS85 328 aa19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms