RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 MUC13Q9H3R2 512 aa9.03□□□□□ -0.96
VPS28-204ENST00000526054 CD300AQ9UGN4 299 aa9.03□□□□□ -0.96
VPS28-204ENST00000526054 TRAPPC4Q9Y296 219 aa9.03□□□□□ -0.96
VPS28-204ENST00000526054 SNX13Q9Y5W8 968 aa9.03□□□□□ -0.96
VPS28-204ENST00000526054 RAI1Q7Z5J4 1906 aaPredicted RBP9.02□□□□□ -0.97
VPS28-204ENST00000526054 ZC3H12DA2A288 527 aaKnown RBP9.02□□□□□ -0.97
VPS28-204ENST00000526054 TRAPPC13A5PLN9 417 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 FAM171A2A8MVW0 826 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 DEFB108AA8MXU0 73 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 ARPC2O15144 300 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 GYG2O15488 501 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 SIAH2O43255 324 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 CHP2O43745 196 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 TPST2O60704 377 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 STAMBPO95630 424 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 PLGP00747 810 aaPredicted RBP9.02□□□□□ -0.97
VPS28-204ENST00000526054 IFNW1P05000 195 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 HEXAP06865 529 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 POU2F1P14859 743 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 TNFRSF1BP20333 461 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 ENPP1P22413 925 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 GTF2E2P29084 291 aaKnown RBP9.02□□□□□ -0.97
VPS28-204ENST00000526054 UGT2B10P36537 528 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 PCYT1AP49585 367 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 OR2B6P58173 313 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 TAS2R41P59536 307 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 SLC35A1P78382 337 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 CEACAM7Q14002 265 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 RNPS1Q15287 305 aaKnown RBP9.02□□□□□ -0.97
VPS28-204ENST00000526054 C1orf140Q5VVS0 124 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 FKBP9P1Q75LS8 142 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 FCRLAQ7L513 359 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 BTLAQ7Z6A9 289 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 VTCN1Q7Z7D3 282 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 LRRC75A-AS1Q8N1F1 130 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 SLC43A2Q8N370 569 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 OR4D11Q8NGI4 311 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 ADAMTS16Q8TE57 1224 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 RNF128Q8TEB7 428 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 SLC38A4Q969I6 547 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 PIGTQ969N2 578 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 SLC7A6OSQ96CW6 309 aaPredicted RBP9.02□□□□□ -0.97
VPS28-204ENST00000526054 ARL5BQ96KC2 179 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 WFIKKN1Q96NZ8 548 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 EPYCQ99645 322 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 CCL19Q99731 98 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 PIP5K1AQ99755 562 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 WFDC6Q9BQY6 131 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 BTBD10Q9BSF8 475 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 PRR14Q9BWN1 585 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 TAPBPLQ9BX59 468 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 GORASP2Q9H8Y8 452 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 RNF122Q9H9V4 155 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 UBTD1Q9HAC8 227 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 GLRX2Q9NS18 164 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 ELOVL5Q9NYP7 299 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 TAS2R1Q9NYW7 299 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 EMC9Q9Y3B6 208 aa9.02□□□□□ -0.97
VPS28-204ENST00000526054 NSD1Q96L73 2696 aaPredicted RBP9.01□□□□□ -0.97
VPS28-204ENST00000526054 A0A087WUJ7 227 aa9.01□□□□□ -0.97
VPS28-204ENST00000526054 OR2T1O43869 369 aa9.01□□□□□ -0.97
VPS28-204ENST00000526054 EIF1BO60739 113 aaKnown RBP9.01□□□□□ -0.97
VPS28-204ENST00000526054 DNAJC8O75937 253 aaPredicted RBP9.01□□□□□ -0.97
VPS28-204ENST00000526054 PDE5AO76074 875 aa9.01□□□□□ -0.97
VPS28-204ENST00000526054 AQP8O94778 261 aa9.01□□□□□ -0.97
VPS28-204ENST00000526054 OR5F1O95221 314 aa9.01□□□□□ -0.97
VPS28-204ENST00000526054 GPIP06744 558 aa9.01□□□□□ -0.97
VPS28-204ENST00000526054 CD8BP10966 210 aa9.01□□□□□ -0.97
VPS28-204ENST00000526054 FPR1P21462 350 aa9.01□□□□□ -0.97
VPS28-204ENST00000526054 CRYGSP22914 178 aa9.01□□□□□ -0.97
VPS28-204ENST00000526054 KIR2DL2P43627 348 aaPredicted RBP9.01□□□□□ -0.97
VPS28-204ENST00000526054 OR1E2P47887 323 aa9.01□□□□□ -0.97
VPS28-204ENST00000526054 CDH12P55289 794 aa9.01□□□□□ -0.97
VPS28-204ENST00000526054 CTBP2P56545 445 aa9.01□□□□□ -0.97
VPS28-204ENST00000526054 MTX3Q5HYI7 312 aa9.01□□□□□ -0.97
VPS28-204ENST00000526054 ZNF474Q6S9Z5 364 aaPredicted RBP9.01□□□□□ -0.97
VPS28-204ENST00000526054 ASRGL1Q7L266 308 aa9.01□□□□□ -0.97
VPS28-204ENST00000526054 CYP4Z1Q86W10 505 aa9.01□□□□□ -0.97
VPS28-204ENST00000526054 RBM45Q8IUH3 476 aaKnown RBP9.01□□□□□ -0.97
VPS28-204ENST00000526054 PIGXQ8TBF5 258 aa9.01□□□□□ -0.97
VPS28-204ENST00000526054 ROBO4Q8WZ75 1007 aa9.01□□□□□ -0.97
VPS28-204ENST00000526054 DNAJA3Q96EY1 480 aa9.01□□□□□ -0.97
VPS28-204ENST00000526054 ZC3HAV1LQ96H79 300 aaKnown RBP9.01□□□□□ -0.97
VPS28-204ENST00000526054 GMPPAQ96IJ6 420 aaPredicted RBP9.01□□□□□ -0.97
VPS28-204ENST00000526054 MPP4Q96JB8 637 aa9.01□□□□□ -0.97
VPS28-204ENST00000526054 COX4I2Q96KJ9 171 aa9.01□□□□□ -0.97
VPS28-204ENST00000526054 PRRC1Q96M27 445 aa9.01□□□□□ -0.97
VPS28-204ENST00000526054 TACO1Q9BSH4 297 aaKnown RBP9.01□□□□□ -0.97
VPS28-204ENST00000526054 NAA11Q9BSU3 229 aaPredicted RBP9.01□□□□□ -0.97
VPS28-204ENST00000526054 TMEM43Q9BTV4 400 aa9.01□□□□□ -0.97
VPS28-204ENST00000526054 THTPAQ9BU02 230 aa9.01□□□□□ -0.97
VPS28-204ENST00000526054 GP6Q9HCN6 339 aa9.01□□□□□ -0.97
VPS28-204ENST00000526054 DCAF13Q9NV06 445 aaKnown RBP9.01□□□□□ -0.97
VPS28-204ENST00000526054 ACTR3BQ9P1U1 418 aa9.01□□□□□ -0.97
VPS28-204ENST00000526054 KLHL9Q9P2J3 617 aa9.01□□□□□ -0.97
VPS28-204ENST00000526054 PROCRQ9UNN8 238 aa9.01□□□□□ -0.97
VPS28-204ENST00000526054 TRAV36DV7A0A075B6V5 113 aa9□□□□□ -0.97
VPS28-204ENST00000526054 IGHV3-15A0A0B4J1V0 119 aa9□□□□□ -0.97
VPS28-204ENST00000526054 LIPT2A6NK58 231 aa9□□□□□ -0.97
VPS28-204ENST00000526054 C16orf97H3BN30 126 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms